View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_23 (Length: 441)
Name: NF20321_low_23
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 3392398 - 3391973
Alignment:
| Q |
1 |
aaaagaactaaatcaaaaacaaaaactcagtcataataacacagtccttgagtgtcggctagaagcaccgatgtcaaaataggagaagactcattaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392398 |
aaaagaactaaatcaaaaacaaaaactcagtcataataacacagtccttgagtgtcggctagaagcaccgatgtcaaaataggagaagactcattaacca |
3392299 |
T |
|
| Q |
101 |
taatcaaagagtttaaacaactgactctcatctttgcaatgatataaacacaagcattcccttcacaaagagtgtgcttcaaaaagaaatttcaatcttt |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392298 |
taatcaaagagtttaaacaactaactctcatctttgcaatgatataaacacaagcattcccttcacaaagagtgtgcttcaaaaagaaatttcaatcttt |
3392199 |
T |
|
| Q |
201 |
atccatgaaatctctaataatctccaagatattagcataatagtgatatagatgtgttcctatagtcactagctcgatcacatgaaaggattatgaataa |
300 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392198 |
attcatgaaatctctaataatctccaacatattagcataatagtgatatagatgtgttcctatagtcactagctcgatcacatgaaaggattatgaataa |
3392099 |
T |
|
| Q |
301 |
caaattacctttctaaatccctcttaccaacacaacttgattaaaaacacttaaatctcagcatgtaacatattcgactaacgaacactctcnnnnnnnc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
3392098 |
caaattacctttctaaatccctcttaccaacacaacttgattaaaaacacttaaatctcagcatgtaacatattccactaacgaacactctcataaaaac |
3391999 |
T |
|
| Q |
401 |
ctaagtgaaagtttccctcatgattt |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
3391998 |
ctaagtgaaagtttccctcatgattt |
3391973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 342
Target Start/End: Complemental strand, 7676165 - 7675904
Alignment:
| Q |
81 |
aggagaagactcattaaccataatcaaagagtttaaacaactgactctcatctttgcaatgatataaacacaagcattcccttcacaaagagtgtgcttc |
180 |
Q |
| |
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||||| ||| ||||||| ||||| ||||||||||||||| || ||||||| ||| ||| || || | |||| | |||||||||| ||| || |||||| |
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|
| T |
7676165 |
aggaggagaatcattaattataattaaagagtttaaacaattgcctctcatattttcaaagacattagcacatgtattcccttcattaagggtatgcttc |
7676066 |
T |
|
| Q |
181 |
aaaaagaaatttcaatctttatccatgaaatctctaataatctccaagatattagcataatagtgatatagatgtgttcctatagtcactagctcgatca |
280 |
Q |
| |
|
|||| ||||| | ||| | | |||||||||| | |||||| |||| |||||| |||| | || |||| |||| ||||| ||||| ||| | || || |
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|
| T |
7676065 |
aaaataaaattctagtctattttcatgaaatctattataatcaccaacatattaacatagtggtaatatcgatgcgttcccgcagtcaatagttggacca |
7675966 |
T |
|
| Q |
281 |
catgaaaggattatgaataacaaattacctttctaaatccctcttaccaacacaacttgatt |
342 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
7675965 |
tgtgaaatgaatatgaataacaaattacctttctaaattgctcttaccagcacaacttgatt |
7675904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 33201019 - 33200876
Alignment:
| Q |
126 |
tctcatctttgcaatgatataaacacaagcattcccttcacaaagagtgtgcttcaaaaagaaatttcaatctttatccatgaaatctctaataatctcc |
225 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| ||||||| ||||| || ||||||| ||||||||||| || | |||| ||||| | ||||||||| |
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|
| T |
33201019 |
tctcatctttgcaaggatattcacataagcatttccttcacgaagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatctttgataatctcc |
33200920 |
T |
|
| Q |
226 |
aagatattagcataatagtgatatagatgtgttcctatagtcac |
269 |
Q |
| |
|
| ||||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
33200919 |
atcatattagcataattgtgatatcgatgtgttctcatagtcac |
33200876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 37829303 - 37829195
Alignment:
| Q |
152 |
aagcattcccttcacaaagagtgtgcttcaaaaagaaatttcaatctttatccatgaaatctctaataatctccaagatat---tagcataatagtgata |
248 |
Q |
| |
|
||||||| |||||||||||||| || ||||||| ||||||||||| || | |||| ||||| | || ||||||| |||| |||||||||||||||| |
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|
| T |
37829303 |
aagcatttccttcacaaagagtatgtttcaaaacaaaatttcaatcattcttcatgtaatctttgatgatctccaccatattagtagcataatagtgata |
37829204 |
T |
|
| Q |
249 |
tagatgtgt |
257 |
Q |
| |
|
| ||||||| |
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|
| T |
37829203 |
tcgatgtgt |
37829195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 37133278 - 37133205
Alignment:
| Q |
211 |
tctctaataatctccaagatattagcataatagtgatatagatgtgttcctatagtcactagctcgatcacatg |
284 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||| || ||||||||| ||| |||||| || |||| |||| |
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|
| T |
37133278 |
tctctaataatcttcaacatattagcataatggtgacattgatgtgttctcataatcactaactagatctcatg |
37133205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 317
Target Start/End: Original strand, 38714275 - 38714500
Alignment:
| Q |
91 |
tcattaaccataatcaaagagtttaaacaactgactctcatctttgcaatgatataaac--acaagcattcccttcacaaagagtgtgcttcaaaaagaa |
188 |
Q |
| |
|
|||||||| |||||||||| | || |||| | ||||||||||||||| |||||| | ||||||||||| ||||| |||||| || ||||||| | |
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|
| T |
38714275 |
tcattaactataatcaaaggatctacacaattagctctcatctttgcaaggatatatccgcacaagcattccattcacgaagagtatgtttcaaaacaat |
38714374 |
T |
|
| Q |
189 |
atttcaatctttatccatgaaatctctaataatctccaagatattagcataatagtgatatagatgtgttcctatagtcactagctcgatcacatgaaag |
288 |
Q |
| |
|
|||||| || || | |||| ||||| | |||||| || || |||||||||| ||||||| ||||||||| ||||| || | || |||| ||||| | |
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|
| T |
38714375 |
atttcagtcattcttcatgtaatctttgataatcacc---atgttagcataatggtgatattgatgtgttctcatagttaccaacttgatcggatgaagg |
38714471 |
T |
|
| Q |
289 |
gattatgaataacaaattacctttctaaa |
317 |
Q |
| |
|
|| | || ||||||||||||||| |||| |
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|
| T |
38714472 |
gaatcagagtaacaaattacctttttaaa |
38714500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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