View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_24 (Length: 438)
Name: NF20321_low_24
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 45762632 - 45762850
Alignment:
| Q |
10 |
attattctgaacctttataattgtgttatgaggagtaatcaaactacactgatgcaatattacacaaatgttacattgttcaatattgttttagccaatt |
109 |
Q |
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| T |
45762632 |
attatcctgaacctttataattgtgttatgaggagtaatcaaactacactgatgcaatattacacaaatgttacatcgttcaatattgttttagccaatt |
45762731 |
T |
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| Q |
110 |
catattttccaaatttgtccttgtactataagtatatatcatcgatataaatttttacataaatctaaaatcatctcatagtttattgagacctcccaag |
209 |
Q |
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| T |
45762732 |
catattttccaaatttgtccttggactataagtatatatcatcgatataaatttttacataaatctaaaatcatctcatagtttattgagacctcccaag |
45762831 |
T |
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| Q |
210 |
atttagggtttatgcgctt |
228 |
Q |
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| T |
45762832 |
atttagggtttatgcgctt |
45762850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 45762892 - 45763076
Alignment:
| Q |
240 |
ttgatttgttggtctgagtttattttagattgaattgaatgacatggtttgatttcagcatttctattgcaatttgtgttagttattgaatttgtgtg-a |
338 |
Q |
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| T |
45762892 |
ttgatttgttggtctgagtttattttagattgaattgaatgacatgctttgatttcagcatttctattgcaatttgtgttatttattgaatttgtgtgaa |
45762991 |
T |
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| Q |
339 |
ggggaaactttcatttctttgcatgtaaccgtttaattaactaatagcctattatgtttttgaagaaaatatcttgatttgaaat |
423 |
Q |
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| T |
45762992 |
ggggaaactttcatttctttgcatgtaaccgtttaattaactaatagcctattatgtttttgaagaaaatatattgatttgaaat |
45763076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 29890059 - 29889984
Alignment:
| Q |
154 |
atataaatttttacataaatctaaaatcatctcatagtttattgagacctcccaagatttagggtttatgcgctttt |
230 |
Q |
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|||||||||||||| ||||||||||| ||| | ||| |||||||||||| |||||||| | ||||||||| ||||| |
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| T |
29890059 |
atataaatttttacgtaaatctaaaaccattt-atatgttattgagacctaccaagattaaaggtttatgcactttt |
29889984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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