View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_25 (Length: 431)
Name: NF20321_low_25
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 50049438 - 50049029
Alignment:
| Q |
17 |
acgttcaagtggcgaaataaggaacttggcctcaatttctagcagtcttttaccagcatttggcactaatcctgatgaaggttacttcgaccttaaaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50049438 |
acgttcaagtggcgaaataaggaacttggcctcaatttctagcagtcttttaccagcatttggcactaatcctgatgaaggttacttcgacctaaaaaaa |
50049339 |
T |
|
| Q |
117 |
tatgttattgctccctatgatcgcagatataggtacatacatatttaatttgccttaatacaatttatttgtttatatcctgtgctgtggaatgacaagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50049338 |
tatgttattgctccctatgatcgcagatataggtacatacatatttaatttgccttaatacaatttatttgtttatatcctgtgctgtggaatgacaagt |
50049239 |
T |
|
| Q |
217 |
ttgtgatatagattgtggcaaacgttcctagtggtattggtggtgtactcagcatgggcatctccattcgagttagctttcagagagatgtcaattgggt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50049238 |
ttgtgatatagattgtggcaaacgttcctagtggtattggtggtgtactcagcatgggcatctccattcgagttagctttcagagagatgtcaattgggt |
50049139 |
T |
|
| Q |
317 |
ccatgttgattgctgatcttgttgttgatgccttctttgcatttgacataatcctgacattctttgtggcttacttggataaatcaacttatttccttga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50049138 |
ccatgttgattgctgatcttgttgttgatgccttctttgcatttgacataatcctgacattctttgtggcttacttggataaatcaacttatttccttgt |
50049039 |
T |
|
| Q |
417 |
tgatgtccat |
426 |
Q |
| |
|
||||| |||| |
|
|
| T |
50049038 |
tgatgaccat |
50049029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University