View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_27 (Length: 428)
Name: NF20321_low_27
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 13850475 - 13850886
Alignment:
| Q |
1 |
cctgtggtattgttgctcaaactcactctattagggggaaaaatctatnnnnnnnnnnnnnctaactcatgtcatggtaaatatagagaatttggtacct |
100 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||| ||||||||| ||| |||| |||| |||||||||||||||||||||||| |
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| T |
13850475 |
cctgtggtattgttgtttaaactcactctattaggggaaaaaatctaaaaagaaactaaaattaaatcatttcatagtaaatatagagaatttggtacct |
13850574 |
T |
|
| Q |
101 |
agtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcacttccagggacgcgtgggacataaataggatcagagaaaaatgtt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13850575 |
agtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcagttccagggacgcgtgggacataaataggatcagagcaaaatgtt |
13850674 |
T |
|
| Q |
201 |
ccttgtcccaagtcatagataccatgaacatttcctccaatttcaagctttgttttgctgaaatcaggtttggcactcaaatcaaattttacaatcccag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13850675 |
ccttgtcccaagtcatagataccatgaacatttcctccaatttcaagctttgttttgccgaaatcaggtttggcactcaaatcaaattttacaatcccag |
13850774 |
T |
|
| Q |
301 |
ttggaatgctgtctaatatggttccatatacatacttctgtttcctgatgaaatgattatagtaaaatacatgttatggacttttggtagacatgcataa |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13850775 |
ttggaatgctgtctaatatggttccataaacatacttctgtttcctgatgaaatgattatagtaaaatacatgttatggacttttggtagacatgcataa |
13850874 |
T |
|
| Q |
401 |
acatgttattat |
412 |
Q |
| |
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|||||||||||| |
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|
| T |
13850875 |
acatgttattat |
13850886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 78 - 408
Target Start/End: Original strand, 13869354 - 13869684
Alignment:
| Q |
78 |
taaatatagagaatttggtacctagtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcacttccagggacgcgtgggacat |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
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|
| T |
13869354 |
taaatatagagaatttggtacctaatattctcatcatgtacaaaaaagatcaagtatccatcatcttcttcagaatcggttccagggacgcgtgggacat |
13869453 |
T |
|
| Q |
178 |
aaataggatcagagaaaaatgttccttgtcccaagtcatagataccatgaacatttcctccaatttcaagctttgttttgctgaaatcaggtttggcact |
277 |
Q |
| |
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|||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
13869454 |
aaataggatcagagcaaaaagttcctcgtcccaagtcatagataccatgaacatttcctccaacttcaagctttgttttgccgaaatcaggtttggcact |
13869553 |
T |
|
| Q |
278 |
caaatcaaattttacaatcccagttggaatgctgtctaatatggttccatatacatacttctgtttcctgatgaaatgattatagtaaaatacatgttat |
377 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
13869554 |
caaatcaaatttaacaatcccagttgtaatgctgtctaatatggttccatatacatacttctgtttcctgatgaaatgtatatagtaaaatatatgttat |
13869653 |
T |
|
| Q |
378 |
ggacttttggtagacatgcataaacatgtta |
408 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| |
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|
| T |
13869654 |
ggacttctggtagtcatgcataaacatgtta |
13869684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 78 - 408
Target Start/End: Original strand, 13891856 - 13892186
Alignment:
| Q |
78 |
taaatatagagaatttggtacctagtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcacttccagggacgcgtgggacat |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13891856 |
taaatatagagaatttggtacctagtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcagttccagggacgcgtgggacat |
13891955 |
T |
|
| Q |
178 |
aaataggatcagagaaaaatgttccttgtcccaagtcatagataccatgaacatttcctccaatttcaagctttgttttgctgaaatcaggtttggcact |
277 |
Q |
| |
|
|||||| |||||| |||| |||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||||| | |||| ||||| |||| | |
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| T |
13891956 |
aaatagcatcagaacaaaacgttcctggtcccaagtcatagagaccatgaatatttcctccaacttcaagctttgtttttccaaaattaggttcggcatt |
13892055 |
T |
|
| Q |
278 |
caaatcaaattttacaatcccagttggaatgctgtctaatatggttccatatacatacttctgtttcctgatgaaatgattatagtaaaatacatgttat |
377 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13892056 |
caaatcaaattttataatcccagttgcattgctgcctaatatggtcccatatacatacttctgtttcctgatgaaatgaatatagtaaaatacatgttat |
13892155 |
T |
|
| Q |
378 |
ggacttttggtagacatgcataaacatgtta |
408 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
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|
| T |
13892156 |
ggacttttggcagacatgcataaacatgtta |
13892186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 301
Target Start/End: Original strand, 13898156 - 13898355
Alignment:
| Q |
102 |
gtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcacttccagggacgcgtgggacataaataggatcagagaaaaatgttc |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| || ||||| | |||||||| || || ||||||| || |||||| ||| ||| |
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| T |
13898156 |
gtattctcgtcatgtacaaaaaagatcaagtatccatcatcttcttcagaatcggtgccagggacacgcggaacataaacagcctcagagccaaaccttc |
13898255 |
T |
|
| Q |
202 |
cttgtcccaagtcatagataccatgaacatttcctccaatttcaagctttgttttgctgaaatcaggtttggcactcaaatcaaattttacaatcccagt |
301 |
Q |
| |
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|| |||||||||||||| ||| ||||||||||||| ||||||||| ||||| | |||| |||||||| |||||||||||| ||||||||||| |
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|
| T |
13898256 |
ctggtcccaagtcatagtgacccacgacatttcctccaacttcaagcttcgtttttccagaatccggtttggcgtgcaaatcaaatttaacaatcccagt |
13898355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13869276 - 13869321
Alignment:
| Q |
1 |
cctgtggtattgttgctcaaactcactctattagggggaaaaatct |
46 |
Q |
| |
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||||||||||||||| | |||||||||||||||||| ||||||||| |
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| T |
13869276 |
cctgtggtattgttgtttaaactcactctattagggtgaaaaatct |
13869321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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