View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_30 (Length: 412)
Name: NF20321_low_30
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 216 - 400
Target Start/End: Original strand, 34483638 - 34483825
Alignment:
| Q |
216 |
gagatgcataaagcagtaa---tagccgcttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaa |
312 |
Q |
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| T |
34483638 |
gagatgcataaaacagtaaaagtagccacttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaa |
34483737 |
T |
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| Q |
313 |
tgtaatctttcatcagttctgcttttgtgtatttatcctcaaagttttcgtatgtgaattctgttattcgtgccacactaagaataat |
400 |
Q |
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| T |
34483738 |
tgtaatctttcatcagttctgcttttgtgtatttatcctcaaagttttcgtatgtgaactctgttattcgtgccacattaagaataat |
34483825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 233 - 366
Target Start/End: Original strand, 34448294 - 34448427
Alignment:
| Q |
233 |
aatagccgcttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaatgtaatctttcatcagttct |
332 |
Q |
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| T |
34448294 |
aatagccacttattataactgatcttgcttcttctactcacttagctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagttct |
34448393 |
T |
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| Q |
333 |
gcttttgtgtatttatcctcaaagttttcgtatg |
366 |
Q |
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| T |
34448394 |
ggttttgtgtatttatcctcaaagttttcgtatg |
34448427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 233 - 370
Target Start/End: Original strand, 34459527 - 34459664
Alignment:
| Q |
233 |
aatagccgcttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaatgtaatctttcatcagttct |
332 |
Q |
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| T |
34459527 |
aatagccacttattataactgatcttgcttcttctactcgcattgctcgatgcttataggatctacaagcagtgcagcaatgtaatctttgagcagatct |
34459626 |
T |
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| Q |
333 |
gcttttgtgtatttatcctcaaagttttcgtatgtgaa |
370 |
Q |
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| T |
34459627 |
ggatttgtgtatttatcctcaaagtcttcgtatatgaa |
34459664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 398
Target Start/End: Original strand, 34473618 - 34473731
Alignment:
| Q |
285 |
cttataggatctataagtagtgcaacaatgtaatctttcatcagttctgcttttgtgtatttatcctcaaagttttcgtatgtgaattctgttattcgtg |
384 |
Q |
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| T |
34473618 |
cttattggatctatgagaagtgcaacaacatagtctttcaacagttccccatttgtgtatttatcctcgtagttttcgtaggtgaactcggttattcgtg |
34473717 |
T |
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| Q |
385 |
ccacactaagaata |
398 |
Q |
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| T |
34473718 |
ccacattaagaata |
34473731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 34483283 - 34483384
Alignment:
| Q |
64 |
cattattgatgaagcaagtcgtcatcaatttaaatatgtacctggaaa-tataaattgacaaatttaatgatacgaaggtaatttagatttcaaactgtg |
162 |
Q |
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| T |
34483283 |
cattattgatgaagcaagtcgtcagcaaataaaaaatgtacgtggaaaatatgtactgacaaatgtaatggtgcgaaggtaatttagatttcaaactgtg |
34483382 |
T |
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| Q |
163 |
gc |
164 |
Q |
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|| |
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| T |
34483383 |
gc |
34483384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 6132428 - 6132366
Alignment:
| Q |
308 |
aacaatgtaatctttcatcagttctgcttttgtgtatttatcctcaaagttttcgtatgtgaa |
370 |
Q |
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| T |
6132428 |
aacaatgtagtctttcagcaattccccatttgtgtatttatcctcaaagttttcgtatgtgaa |
6132366 |
T |
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