View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_31 (Length: 411)
Name: NF20321_low_31
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 14159712 - 14160073
Alignment:
| Q |
19 |
ccttagacagaaaattgggttggaacggagaacccaactttcatgctccacaagttcctggcggagattcgtcactggtaaacgatggtgaaaacatcgt |
118 |
Q |
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| T |
14159712 |
ccttagagagaaaattgggttggaacggagatcccatctttcatgctccacaagttcctggcggagattcgtcactggtaaacgatggtgaaaacatcgt |
14159811 |
T |
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| Q |
119 |
acttaaaacaagataatcagaaaggaataacgttattaagcaattttcagtttatgaataattttgaaatttggtaaatttagagactaatttatttgac |
218 |
Q |
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| T |
14159812 |
acttaaaacaagataatcagaaaggaataacgttattaagcaattttcagtttatgaataattttgaaatttggtaaatttagagactaatttatttgac |
14159911 |
T |
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| Q |
219 |
ttcatcaattcatttggatcgtatctgtttcgaatgaggcacaattatcaagcttaagttcttaatttaatccttgtgtaagaaggtccannnnnnncag |
318 |
Q |
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| T |
14159912 |
ttcatcaattcatttggatcatatctgtttcgaatgaggcacaattatcaagcttaagttcttaatttaatccttgtgtaagaaggtccatttttttcag |
14160011 |
T |
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| Q |
319 |
gttgaattctttgtcagattttagttgattgctatctcaatttatgttaccaaaagcattga |
380 |
Q |
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| T |
14160012 |
tttgaattctttgtcagattttagttgattgctatctcaatttatgttaccaaaagcattga |
14160073 |
T |
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