View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_33 (Length: 410)
Name: NF20321_low_33
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Original strand, 47889071 - 47889456
Alignment:
| Q |
7 |
atatcaataattgatggtgataaatactttagatatgcgatcttttcaaaagacgcacaaaaaagagcaagggaaattcgcgatcttatagcataggaga |
106 |
Q |
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| T |
47889071 |
atatcaataattgatggtgataaatactttagatatgcgatcttttcaaaagacgcacaaaaaagagcaagggaaattcgcgatcttatagcataggaga |
47889170 |
T |
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| Q |
107 |
acttgtgatctccttgcatagtacacttccttcttagtatatgcttggataggcagatgagattaacaaaatcacaattgcatgttgaagctacaaagta |
206 |
Q |
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| T |
47889171 |
acttgtgatctccttgcatagtacacttccttcttagtatatgcttggataggcagatgagattaacaaaatcacaattgcctgttgaagctacaaagta |
47889270 |
T |
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| Q |
207 |
tagtgtttgtcagattctgccaatctcaccgcaaacccaaccatacactaatgtattctcaattgtatcttaagcaggcatagaatgccccaaatgaaaa |
306 |
Q |
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| T |
47889271 |
tagtgtttgtcagattctgccaatctcaccgcaaacccaaccatgcactaatgtattgtcaattttatcttaagcaggcatagaatgccccaaatgaaaa |
47889370 |
T |
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| Q |
307 |
gccacaaacaaatatacaagcatgcacatagagcaaacaatcccatcgtttatttatcctaaatccaaaatatttagcctaaacca |
392 |
Q |
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| T |
47889371 |
gccacaaacaaatatacaagcatgcacatagagcaaacaatcccatcgtttatttatcctaaatccaaaatatttagcctaaacca |
47889456 |
T |
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