View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_low_34 (Length: 398)

Name: NF20321_low_34
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_low_34
NF20321_low_34
[»] chr8 (3 HSPs)
chr8 (18-398)||(18318344-18318724)
chr8 (326-373)||(18314647-18314694)
chr8 (56-99)||(32152209-32152252)
[»] chr3 (1 HSPs)
chr3 (35-104)||(513426-513495)
[»] chr1 (2 HSPs)
chr1 (37-104)||(33161431-33161498)
chr1 (56-106)||(15837976-15838026)
[»] chr7 (3 HSPs)
chr7 (37-103)||(10168806-10168872)
chr7 (37-103)||(10176331-10176397)
chr7 (34-90)||(15091346-15091402)
[»] chr4 (6 HSPs)
chr4 (42-104)||(6007663-6007725)
chr4 (48-105)||(1547461-1547518)
chr4 (41-106)||(2460593-2460658)
chr4 (37-109)||(548246-548318)
chr4 (38-102)||(566623-566687)
chr4 (340-372)||(8186382-8186414)
[»] chr5 (2 HSPs)
chr5 (37-99)||(41900250-41900312)
chr5 (44-104)||(17205954-17206014)
[»] chr6 (1 HSPs)
chr6 (56-104)||(28935571-28935619)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 18318344 - 18318724
Alignment:
Q  18 actactacaaccgtaattgcttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactcaaagtcagcaaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18318344 actactacaaccgtaattgcttgaaatctctatccgttgtctctaaacagtttctcaccgtcaccaacagtctccgattctcactcaaagtcagcaaagt 18318443  T
Q  118 cacatggttccatcaaataaatatccgtttcattccttctctatcaagcctcttagatagattctccaacttccactctcttcacctcacataccacttc 217  Q
      ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18318444 tgcatggttccattaaataaatatccgtttcgttccttctctatcaagcctcttagatagattctccaacctccactctcttcacctcacataccacttc 18318543  T
Q  218 aaagttaacctcaatatgcttctctgccaaatctctactctcccgttgaagaatctcacatcgctccattttttctgttactataacctctttcccgcgg 317  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18318544 aaagttaacctaaatatgcttctctgccaaatctctactctcccgttgaagaatctcacatcgctccattttttctgttactataacctctttcccgcgg 18318643  T
Q  318 atgggctgcgagttttctgcaaaaatattacaactttgacctcactcgcatgttctggccttcaatgtctcaatagcactt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18318644 atgggctgcgagttttctgcaaaaatattacaactttgacctcactcacatgttctggccttcaatgtctcaatagcactt 18318724  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 18314647 - 18314694
Alignment:
Q  326 cgagttttctgcaaaaatattacaactttgacctcactcgcatgttct 373  Q
    ||||||||||   |||||||||||||||||||||||||| ||||||||    
T  18314647 cgagttttctctcaaaatattacaactttgacctcactctcatgttct 18314694  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 32152252 - 32152209
Alignment:
Q  56 gtctctaaacagtttctcaccatcaccaacagtctccgattctc 99  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||    
T  32152252 gtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 513426 - 513495
Alignment:
Q  35 tgcttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 104  Q
    |||||||||||||| ||||  ||||| |||||||| ||| |||||||||||| |||||||||||| ||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctctca 513495  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 33161498 - 33161431
Alignment:
Q  37 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 104  Q
    |||||| ||||||||| | ||||| |||||||||||| ||||||| || ||||| |||||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactca 33161431  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 15837976 - 15838026
Alignment:
Q  56 gtctctaaacagtttctcaccatcaccaacagtctccgattctcactcaaa 106  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||| ||||||    
T  15837976 gtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaa 15838026  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 10168806 - 10168872
Alignment:
Q  37 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactc 103  Q
    |||||| ||||||||| ||||||| |||||||| ||| |||||||||||| ||| ||||| ||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10168872  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 10176331 - 10176397
Alignment:
Q  37 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactc 103  Q
    |||||| ||||||||| ||||||| |||||||| ||| |||||||||||| ||| ||||| ||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10176397  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 15091346 - 15091402
Alignment:
Q  34 ttgcttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtct 90  Q
    ||||||||| ||||| ||| | ||||| |||||||| ||| ||||||||||||||||    
T  15091346 ttgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtct 15091402  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 6007725 - 6007663
Alignment:
Q  42 aatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 104  Q
    ||||||| ||| | ||||| |||||||| ||| ||||||||||||||||||||||||| ||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctca 6007663  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 1547461 - 1547518
Alignment:
Q  48 tatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactcaa 105  Q
    ||||| ||||||| ||||| || ||| ||||||||||| ||||||||||||| |||||    
T  1547461 tatcccttgtctccaaacaattcctctccatcaccaaccgtctccgattctctctcaa 1547518  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 2460658 - 2460593
Alignment:
Q  41 aaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactcaaa 106  Q
    |||||||| ||| | ||||| |||||||| ||| ||||||||||  ||||||||||||| ||||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctctcaaa 2460593  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 548318 - 548246
Alignment:
Q  37 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactcaaagtc 109  Q
    |||||| ||||| || |||||||| |||||||||||| |||||||||| | ||| | | ||||||||| ||||    
T  548318 cttgaagtctctctctgttgtctcaaaacagtttctctccatcaccaataatcttccactctcactcacagtc 548246  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 566687 - 566623
Alignment:
Q  38 ttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcact 102  Q
    ||||| ||||| ||| | ||||| |||||||||||| |||||||| ||||||| ||||| |||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgattttcact 566623  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 372
Target Start/End: Original strand, 8186382 - 8186414
Alignment:
Q  340 aaatattacaactttgacctcactcgcatgttc 372  Q
    ||||||||||||||||||||||||| |||||||    
T  8186382 aaatattacaactttgacctcactcacatgttc 8186414  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 41900250 - 41900312
Alignment:
Q  37 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctc 99  Q
    |||||||||||| ||  | ||||| |||||||||||| |||||||||||| ||| ||||||||    
T  41900250 cttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctc 41900312  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 17206014 - 17205954
Alignment:
Q  44 tctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 104  Q
    ||||||||| | ||||| |||||||| ||| | |||||| ||||| |||||||||||||||    
T  17206014 tctctatccctcgtctccaaacagttactctctatcaccgacagtttccgattctcactca 17205954  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 28935619 - 28935571
Alignment:
Q  56 gtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 104  Q
    ||||| |||||||| ||| | ||||||||||||||||||||| ||||||    
T  28935619 gtctcgaaacagttcctctctatcaccaacagtctccgattcacactca 28935571  T

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