View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_39 (Length: 371)
Name: NF20321_low_39
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 1877548 - 1877198
Alignment:
| Q |
13 |
taggtaatagtaatgccttgtgggaacatagcagtcaacttatagactcaacagtgtttgaaatattttaatcactttcaccttcttgccctttgtgtaa |
112 |
Q |
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| T |
1877548 |
taggtaatagtaatgccttgtgggaacatagcagtcaacttatagactcaacagtgtttgaaatattttaatccctttcaacttcttgccctttgtgtaa |
1877449 |
T |
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| Q |
113 |
cacatagagggaaagcttttgaattaaaaacctataatgcttgggcaatgggcatgaatctagcatgaagaatgattagaagaaaaaaccatttgatacg |
212 |
Q |
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| T |
1877448 |
cacatagagggaaagcttttgaattaaaaacctataatgcttg-------ggcatgaatctagcatgaagaatgattagaagaaaaaaccatttgatacg |
1877356 |
T |
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| Q |
213 |
tctcctatagtcctataagtggttggtccatatatttctaaatgcttcttttttcatgtgttgaagattttcaagg----------annnnnnnnaatat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | |
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| T |
1877355 |
tctcctatagtcctataagtggttggtccatatatttctaaatgcttcttttttcatgtgttgaagattttcaaggatttttttttattttttttatttt |
1877256 |
T |
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| Q |
303 |
ttttatcctattgaagtggatgaacagaagtctagagtaatctaactaagtggaagat |
360 |
Q |
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| T |
1877255 |
ttttatcctattgaagtggatgaacagaagtctagagtaatctaattaagtggaagat |
1877198 |
T |
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