View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_4 (Length: 659)
Name: NF20321_low_4
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 31797844 - 31797622
Alignment:
| Q |
15 |
cacagagacaagtaatgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31797844 |
cacagagacaagtaatgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagat |
31797745 |
T |
|
| Q |
115 |
tatacttgttgcacacaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttcatgaccataagtattcactatatcatccaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31797744 |
tatacttgttgcacacaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttcatgaccataagtattcactaaatcatccaa |
31797645 |
T |
|
| Q |
215 |
tatgtaaaattgagcttatgaaa |
237 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31797644 |
tatgtaaaattgagcttatgaaa |
31797622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 556 - 639
Target Start/End: Complemental strand, 31797624 - 31797541
Alignment:
| Q |
556 |
aaactttatatagaaatgcatgagcagggggccaatatatgaaatagtatatactttgcaagtataggcttgcttgggattcct |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31797624 |
aaactttatatagaaatgcatgagcagggggccaatatatgaaatagtatatactttgcaagtataggcttgcttgggattcct |
31797541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 31787378 - 31787308
Alignment:
| Q |
46 |
aagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagatta |
116 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31787378 |
aagatcggacatttcaattatatgcacgaagatatgatttctcacaagaactttggagttgaaagagatta |
31787308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 584 - 640
Target Start/End: Complemental strand, 31786209 - 31786153
Alignment:
| Q |
584 |
gggccaatatatgaaatagtatatactttgcaagtataggcttgcttgggattcctg |
640 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
31786209 |
gggcctatatatgaaatagtatatactttgcaagcataggcttgattgggattcctg |
31786153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 455
Target Start/End: Complemental strand, 31786930 - 31786851
Alignment:
| Q |
373 |
gagtctgccttgcaccgcactcatacctttaagcccattttgaaaaggtacattataaatttcgttcagctaatttcaaggaa |
455 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||| ||| |||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
31786930 |
gagtttgccttgcactgcactcctacctttaagctcatcttgaaaaggtacat---aacttgggttcagctaatttcaaggaa |
31786851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 31787210 - 31787163
Alignment:
| Q |
188 |
accataagtattcactatatcatccaatatgtaaaattgagcttatga |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| | ||||||| |
|
|
| T |
31787210 |
accataagtattcactatatcatcaaataggtaaaatttatcttatga |
31787163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 583
Target Start/End: Complemental strand, 31786794 - 31786701
Alignment:
| Q |
491 |
attcatctcatagtatcttg-tgattaaaaaatcagcctaaaaagcttttagtatgtattttaataaaactttatatagaaatgcatgagcagg |
583 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| |||||| | |||| |||| |||| |||||||| |||| |||||||| |||||||| |
|
|
| T |
31786794 |
attcatctcactatatcttgatgattaaaaaatcagtctaaaatgtgtttaccatgtgttttgataaaactctatagagaaatgcctgagcagg |
31786701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University