View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_42 (Length: 361)
Name: NF20321_low_42
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 66 - 346
Target Start/End: Complemental strand, 1247329 - 1247055
Alignment:
| Q |
66 |
acatatgttttgcactttggtaatcaggtttttt---ctgttttacacgtgcatggttgaagttaacatgcaagcatttactcatttcctgctgttttgc |
162 |
Q |
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| T |
1247329 |
acatatgttttgcactttggtaatcaggtttttttttctgttttacacgtgcaag-----------catttactcatttactcatttcccgctgttttgc |
1247241 |
T |
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| Q |
163 |
ttagtagttggttgggcatttaagctacatactatgtcggtaatgtgcctagtgcttggcattgaagatacat--gtttgtattgtctgtgtacgttgtg |
260 |
Q |
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| T |
1247240 |
ttagtagttggttgggcatttaagctacatactatgtcggtaatgtgcctagtgctttgcattgaagatacatatgtctgtattgtttgtgtacgttgtg |
1247141 |
T |
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| Q |
261 |
ctgggcagtaaagttacatggaatggaaggctaaggagagtaagcctttaattttgttgccagtagtttggtaaatctgagtaaat |
346 |
Q |
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| T |
1247140 |
ctgggcagtaaaggtacatggaatggaaggctaaggagagtaagcctttaattttgttgctagtagtttggtaaatctgagtaaat |
1247055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 1247368 - 1247322
Alignment:
| Q |
5 |
gcataggagagttatatacgttgctggagcctactagccacatatgt |
51 |
Q |
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| T |
1247368 |
gcataggagagttatatacgttgcaggagcctactagccacatatgt |
1247322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 1212427 - 1212365
Alignment:
| Q |
275 |
tacatggaatggaaggctaaggagagtaagcc-tttaattttgttgccagtagtttggtaaat |
336 |
Q |
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| T |
1212427 |
tacatgaaatggaaggctagggagagtaagccatttcatttggttgccactagtttggtaaat |
1212365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 11202188 - 11202126
Alignment:
| Q |
275 |
tacatggaatggaaggctaaggagagtaagcc-tttaattttgttgccagtagtttggtaaat |
336 |
Q |
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|||||| |||||||||||| |||||||||||| ||| |||| ||||||| ||||||||||||| |
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| T |
11202188 |
tacatgaaatggaaggctagggagagtaagccatttcatttggttgccactagtttggtaaat |
11202126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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