View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_44 (Length: 349)
Name: NF20321_low_44
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 2876157 - 2875841
Alignment:
| Q |
13 |
aatatacttttaaaaatatttggattttgaaattttgatgtgttaaaaatcctaaaattacatctagtcattgaaccatgactaaaatgtttgtgacaac |
112 |
Q |
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| T |
2876157 |
aatatacttttaaaaatatttggattttgaaattttgatgtgttaaaaatcctaaaattatatctagtcattgaaccatgattaaaatgtttgcgacaac |
2876058 |
T |
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| Q |
113 |
ttttttcctttataaacaaacggtgaaactnnnnnnntatgctccggcttttaatattggactggatgtattttgnnnnnnnntggcatgcgagtagtat |
212 |
Q |
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| T |
2876057 |
ttttttcctttataaac----ggtgaaactaaaaaa-tatgctccggcttttaatattggactggatgtattttgaaaaaaaatggcatgcgagtagtat |
2875963 |
T |
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| Q |
213 |
ggtggtggaaaaagaatttcacactttcctaaacatgggctaattgagctccactggagaacttgttattatagaaaatttaatcctatacccctacgtc |
312 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2875962 |
ggtggtggaaaaagaatttcacactttcataaacatgggctaattgagctccactggagaacttgttattatagaaaattttatcctatacccctacgtc |
2875863 |
T |
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| Q |
313 |
tatactttcacccctacaatat |
334 |
Q |
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|||||||||||||||||||||| |
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| T |
2875862 |
tatactttcacccctacaatat |
2875841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 2890262 - 2890303
Alignment:
| Q |
34 |
ggattttgaaattttgatgtgttaaaaatcctaaaattacat |
75 |
Q |
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| T |
2890262 |
ggattttgaaatcttgatgtatttaaaatcctaaaattacat |
2890303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 18016646 - 18016602
Alignment:
| Q |
288 |
aaatttaatcctatacccctacgtctatactttcacccctacaat |
332 |
Q |
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|||||| | ||||||||| ||| |||||||||||||||||||||| |
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| T |
18016646 |
aaattttaccctatacccttacctctatactttcacccctacaat |
18016602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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