View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_low_45 (Length: 347)

Name: NF20321_low_45
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_low_45
NF20321_low_45
[»] chr7 (7 HSPs)
chr7 (18-339)||(38195439-38195761)
chr7 (145-273)||(38176242-38176370)
chr7 (145-261)||(8178029-8178145)
chr7 (215-273)||(4097818-4097876)
chr7 (215-273)||(10486560-10486618)
chr7 (136-262)||(42415260-42415386)
chr7 (223-259)||(5460933-5460969)
[»] chr4 (3 HSPs)
chr4 (107-339)||(47813784-47814013)
chr4 (208-325)||(25790746-25790863)
chr4 (145-273)||(29542191-29542319)
[»] chr3 (6 HSPs)
chr3 (157-296)||(29123123-29123262)
chr3 (136-312)||(25500899-25501075)
chr3 (145-273)||(1527251-1527379)
chr3 (136-262)||(53920288-53920414)
chr3 (129-262)||(1930109-1930242)
chr3 (128-165)||(26924518-26924555)
[»] chr1 (5 HSPs)
chr1 (134-323)||(4816645-4816834)
chr1 (131-271)||(5299424-5299564)
chr1 (185-273)||(19023308-19023396)
chr1 (137-194)||(46496856-46496913)
chr1 (174-291)||(52176512-52176629)
[»] chr5 (3 HSPs)
chr5 (111-331)||(11468748-11468962)
chr5 (153-259)||(43391059-43391165)
chr5 (143-262)||(12186851-12186970)
[»] scaffold0094 (1 HSPs)
scaffold0094 (136-262)||(15221-15347)
[»] chr2 (2 HSPs)
chr2 (145-273)||(4318722-4318850)
chr2 (143-185)||(31015443-31015485)
[»] chr8 (3 HSPs)
chr8 (205-259)||(2704022-2704076)
chr8 (203-262)||(15074404-15074463)
chr8 (145-232)||(22642808-22642895)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 38195439 - 38195761
Alignment:
Q  18 attccctcctgtacaccagttaaataatgttttcactagtaaattagtagttgattttcttatcctgtcacactagtttcnnnnnnnnn-gaagcttata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  38195439 attccctcctgtacaccagttaaataatgttttcactagtaaattagtagttgattttcttatcctgtcacactagtttctttttttttcgaagcttata 38195538  T
Q  117 ttatttcatttcttcttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38195539 ttatttcatttcttcttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatgcaactttgtcgcccgagctaaactatgagc 38195638  T
Q  217 gacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattcagattgg 316  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38195639 gacataatttgcttgtctccagatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattcagattgg 38195738  T
Q  317 ttattagttatgtcacctatgct 339  Q
    ||||||||||||||||| |||||    
T  38195739 ttattagttatgtcaccaatgct 38195761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 38176242 - 38176370
Alignment:
Q  145 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 244  Q
    ||||||||||||||||||||  || |||||||||| ||| |  ||  ||| | ||| ||| |||||||||||||||  ||| ||||||||||  |  |||    
T  38176242 aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa 38176341  T
Q  245 cttatcttaaagtttggaaagtgttgtaa 273  Q
    |||||||||||||||| ||| ||||||||    
T  38176342 cttatcttaaagtttgtaaattgttgtaa 38176370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 8178029 - 8178145
Alignment:
Q  145 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 244  Q
    |||||||||||||||| |||  || || ||| ||||||||||||| |||| | ||| ||||||  |||| || ||| |||||||||||||||     |||    
T  8178029 aatacaagatggaatccaatcaaaaacgtggcgactagcatacaattttgactccctagctaatgtatgggcaacaaaatttgcttgtctcctagcaaaa 8178128  T
Q  245 cttatcttaaagtttgg 261  Q
    |||||||||||||||||    
T  8178129 cttatcttaaagtttgg 8178145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 4097876 - 4097818
Alignment:
Q  215 gcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa 273  Q
    ||||||||||||||| |||||  ||| |||||||||||||||||||| || ||||||||    
T  4097876 gcgacataatttgctagtctcgtgataaaacttatcttaaagtttgggaattgttgtaa 4097818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 10486560 - 10486618
Alignment:
Q  215 gcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa 273  Q
    ||||||||||||||||||||||  |  ||||||||||||||||||| ||| ||||||||    
T  10486560 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaa 10486618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 42415386 - 42415260
Alignment:
Q  136 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 235  Q
    |||||| |||||| | |||||||||||||  ||| | ||||||| ||||| |||  | | ||||| ||||||  ||||||||||| |||| |||||||||    
T  42415386 aatagtttcaatatatgatggaatcaaatcaaactcctggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctc 42415287  T
Q  236 cggatgaaacttatcttaaagtttgga 262  Q
    |  |  ||||||||| |||||||||||    
T  42415286 ctaacaaaacttatcctaaagtttgga 42415260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 5460969 - 5460933
Alignment:
Q  223 atttgcttgtctccggatgaaacttatcttaaagttt 259  Q
    ||||||||||||||  |||||||||||||||||||||    
T  5460969 atttgcttgtctcctaatgaaacttatcttaaagttt 5460933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 107 - 339
Target Start/End: Original strand, 47813784 - 47814013
Alignment:
Q  107 gaagcttatattatttcatttcttcttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagcta 206  Q
    |||||||||||||||||||||||   |||||||||||||||| || ||| ||||||||| || | ||||||||||||||||||||||| ||  ||| |||    
T  47813784 gaagcttatattatttcatttct---taaaatagtatcaatataaaatgaaatcaaattaaatatttggtgactagcatacaactttgccgttcgaacta 47813880  T
Q  207 aactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaa 306  Q
    ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47813881 aacaatggacgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctgcaagtagctaatatgtttccaaa 47813980  T
Q  307 ttcagattggttattagttatgtcacctatgct 339  Q
    ||||||||| |  |||||| ||||||| |||||    
T  47813981 ttcagattgatctttagttctgtcaccaatgct 47814013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 325
Target Start/End: Complemental strand, 25790863 - 25790746
Alignment:
Q  208 actatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaat 307  Q
    |||||||||||||||||||||||| || |  ||||| ||||||||||| |||||| |||||| ||||||| || |||||||| |||  ||||| ||||||    
T  25790863 actatgagcgacataatttgcttgactacatatgaagcttatcttaaaatttggatagtgttataacaaaactgtacaagtacctataatgttgccaaat 25790764  T
Q  308 tcagattggttattagtt 325  Q
    ||| ||||||||||||||    
T  25790763 tcatattggttattagtt 25790746  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 273
Target Start/End: Complemental strand, 29542319 - 29542191
Alignment:
Q  145 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 244  Q
    |||||||||||||||| |||  || || ||||||| ||| ||||| |||| | ||| |||||| | ||| |||||||||||||||||| |||  |  |||    
T  29542319 aatacaagatggaatcgaatcaaaaacatggtgacgagcgtacaattttgactccctagctaagccatgggcgacataatttgcttgtatcctaacaaaa 29542220  T
Q  245 cttatcttaaagtttggaaagtgttgtaa 273  Q
     ||||||||||||||| ||| ||||||||    
T  29542219 tttatcttaaagtttgaaaattgttgtaa 29542191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 29123262 - 29123123
Alignment:
Q  157 aatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaag 256  Q
    |||||||||||| | ||||||||| ||||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |    
T  29123262 aatcaaattgaatatttggtgactggcatacaactttgccgcccgagctaaattatgggcggcataatttgcttgtctccggatgaaacttatcttaacg 29123163  T
Q  257 tttggaaagtgttgtaacaaatctctacaagtagctaata 296  Q
    ||| |||||||||||||||||||||||||||||| |||||    
T  29123162 tttagaaagtgttgtaacaaatctctacaagtagttaata 29123123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 312
Target Start/End: Complemental strand, 25501075 - 25500899
Alignment:
Q  136 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 235  Q
    |||||| ||||||||||||||||||||||  || ||| |||||| ||||||||| ||||  ||||  ||||||||||| |||||| ||||||||||||||    
T  25501075 aatagtttcaatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaactatgggcgacacaatttgcttgtctc 25500976  T
Q  236 cggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattcaga 312  Q
    |  |   || ||||||||||||||||||| || | ||||| | ||||||||||||| |  || || |||||||||||    
T  25500975 cttacataatttatcttaaagtttggaaaatgatataacagacctctacaagtagccatgatattcccaaattcaga 25500899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 273
Target Start/End: Complemental strand, 1527379 - 1527251
Alignment:
Q  145 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 244  Q
    ||||||||||||||||||||  || |||||||||| ||| |  ||  ||| | ||| ||| |||||||||||||||  ||| ||||||||||  |  |||    
T  1527379 aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa 1527280  T
Q  245 cttatcttaaagtttggaaagtgttgtaa 273  Q
    |||||||||||||||| ||| ||||||||    
T  1527279 cttatcttaaagtttgtaaattgttgtaa 1527251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 53920414 - 53920288
Alignment:
Q  136 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 235  Q
    |||||| |||||||||||||||||||||   ||| ||||||||| ||||| |||  | | ||||| ||||||  ||||||||||| |||| ||||||||     
T  53920414 aatagtttcaatacaagatggaatcaaaacaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctt 53920315  T
Q  236 cggatgaaacttatcttaaagtttgga 262  Q
    |  |  ||||| |||||||||||||||    
T  53920314 ctaacaaaactcatcttaaagtttgga 53920288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 262
Target Start/End: Complemental strand, 1930242 - 1930109
Alignment:
Q  129 ttcttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgc 228  Q
    |||| |||| ||| ||||||||||||||||||||||  |||  |||||||| |||||  ||  ||| |||||  |||||| |||||| ||||||||| ||    
T  1930242 ttctcaaaagagtctcaatacaagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgacgcccctgctaaagtatgagtgacataattagc 1930143  T
Q  229 ttgtctccggatgaaacttatcttaaagtttgga 262  Q
     | |||||     |||||||| ||||||||||||    
T  1930142 atttctcctagcaaaacttattttaaagtttgga 1930109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 26924555 - 26924518
Alignment:
Q  128 cttcttaaaatagtatcaatacaagatggaatcaaatt 165  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  26924555 cttcttaaaagagtctcaatacaagatggaatcaaatt 26924518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 323
Target Start/End: Complemental strand, 4816834 - 4816645
Alignment:
Q  134 aaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtc 233  Q
    |||||||||  |||| |||||| ||||||||  || |||||||||| ||||||||| |||| | |||  ||||| ||||| |||||||||||||||||||    
T  4816834 aaaatagtagtaatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataatttgcttgtc 4816735  T
Q  234 tccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattcagattggttattag 323  Q
    |||  |   || ||||||||||||||||||| |||||||||||| |||||||| |||| |   | || ||||||||| ||||||||||||    
T  4816734 tccttacataatttatcttaaagtttggaaaatgttgtaacaaagctctacaattagccatgctattaccaaattcaaattggttattag 4816645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 5299564 - 5299424
Alignment:
Q  131 cttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgctt 230  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||||| |||| |||| |||| | |||  ||||| | ||| |||||  |||| ||||    
T  5299564 cttaaaatagtagcaatacaagatggaatcaaattgaaaacgtggtgacgagcacacaattttgcctcccttgctaagcaatgggcgaccgaattcgctt 5299465  T
Q  231 gtctccggatgaaacttatcttaaagtttggaaagtgttgt 271  Q
    |||| |  |  ||| ||||||||||||||||||| ||||||    
T  5299464 gtcttctaacaaaatttatcttaaagtttggaaattgttgt 5299424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 19023308 - 19023396
Alignment:
Q  185 tacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa 273  Q
    ||||| |||| | ||| |||||| ||||||| || |||||||| ||||||||  |  ||||||||||||||||||| ||| ||||||||    
T  19023308 tacaattttgactccctagctaagctatgagtgatataatttgtttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaa 19023396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 46496913 - 46496856
Alignment:
Q  137 atagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttg 194  Q
    |||||| |||||||||||||||||||||  || || ||||||| ||||||||| ||||    
T  46496913 atagtagcaatacaagatggaatcaaataaaaaacctggtgacgagcatacaaatttg 46496856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 52176629 - 52176512
Alignment:
Q  174 ggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa 273  Q
    |||||| |||||||||||||||||| |    ||||||||| | |||| |||||||||| |||   |  ||||||| ||||||||||||||| || | | |    
T  52176629 ggtgacgagcatacaactttgtcgctcttcttaaactatgggtgacacaatttgcttgactctttacaaaacttaccttaaagtttggaaaatgatatga 52176530  T
Q  274 caaatctctacaagtagc 291  Q
    |||| |||| ||||||||    
T  52176529 caaagctctgcaagtagc 52176512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 331
Target Start/End: Complemental strand, 11468962 - 11468748
Alignment:
Q  111 cttatattatttcatttcttcttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaact 210  Q
    |||||||||||||||| |||  ||||||||||| |||| ||||||||||||| ||||| | ||||||||||||||||||||||  || |  |||| |  |    
T  11468962 cttatattatttcatt-ctt--taaaatagtattaatataagatggaatcaa-ttgaatatttggtgactagcatacaactttaccgtcttagctgat-t 11468868  T
Q  211 atgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattca 310  Q
    ||  |||| ||||||||||||| | | |||||||||||| |||||||||| ||| |||||||| ||||| |||| | || |||  |||||| |||||||     
T  11468867 ataggcgatataatttgcttgttttcagatgaaacttattttaaagtttgaaaaatgttgtaataaatccctactaatatctataatgttttcaaattcg 11468768  T
Q  311 gattggttattagttatgtca 331  Q
    ||||||||| |||||||||||    
T  11468767 gattggtta-tagttatgtca 11468748  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 43391059 - 43391165
Alignment:
Q  153 atggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatctt 252  Q
    ||||||||||||  || || || |||||||||||||  |||| | |||  |||||| |||| ||||||||||||||||||||||| || ||||||||| |    
T  43391059 atggaatcaaatcaaaaacatgatgactagcatacagttttgacacccttgctaaagtatgggcgacataatttgcttgtctccgaataaaacttatcat 43391158  T
Q  253 aaagttt 259  Q
    |||||||    
T  43391159 aaagttt 43391165  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 262
Target Start/End: Complemental strand, 12186970 - 12186851
Alignment:
Q  143 tcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatga 242  Q
    ||||||||||||||||||||||  ||||||||||||| ||||| || |  || | ||   ||||| ||||| |||||  |||| ||||| ||||  |  |    
T  12186970 tcaatacaagatggaatcaaatcaaacacttggtgacgagcatgcatccgtgacacctttgctaagctatgggcgacggaattcgcttgcctcctaacaa 12186871  T
Q  243 aacttatcttaaagtttgga 262  Q
    ||||||||||||||||||||    
T  12186870 aacttatcttaaagtttgga 12186851  T

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Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 15347 - 15221
Alignment:
Q  136 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 235  Q
    |||||| |||||| || ||||||| ||||  ||| ||||||||| ||||| |||  | | ||||| ||||||  ||||||||||| |||| |||||||||    
T  15347 aatagtttcaatataaaatggaattaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctc 15248  T
Q  236 cggatgaaacttatcttaaagtttgga 262  Q
    |  |  |||||||||||||||||||||    
T  15247 ctaacaaaacttatcttaaagtttgga 15221  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 4318722 - 4318850
Alignment:
Q  145 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 244  Q
    ||||||||||||||||||||  || |||||||||| ||| |  ||  ||| | ||| ||| |||||||||||||||  |||| |||||||||  |  |||    
T  4318722 aatacaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaacatttacttgtctcctaacaaaa 4318821  T
Q  245 cttatcttaaagtttggaaagtgttgtaa 273  Q
    |||||||||||||||| ||| | ||||||    
T  4318822 cttatcttaaagtttgtaaatttttgtaa 4318850  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 31015443 - 31015485
Alignment:
Q  143 tcaatacaagatggaatcaaattgaacacttggtgactagcat 185  Q
    ||||||||||||||||||||||  ||||||||||||| |||||    
T  31015443 tcaatacaagatggaatcaaatcaaacacttggtgacgagcat 31015485  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 2704022 - 2704076
Alignment:
Q  205 taaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagttt 259  Q
    |||| |||||||||||||||||||||||||||  |  ||||||||||||||||||    
T  2704022 taaagtatgagcgacataatttgcttgtctcctaacaaaacttatcttaaagttt 2704076  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 15074404 - 15074463
Alignment:
Q  203 gctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttgga 262  Q
    |||| ||||||||||||| ||||||||||||| |  |  |||||||||||||||||||||    
T  15074404 gctatactatgagcgacacaatttgcttgtcttctaacaaaacttatcttaaagtttgga 15074463  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 22642808 - 22642895
Alignment:
Q  145 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgt 232  Q
    ||||||||||| ||||||||  || |||||||||||||||||||| || | | |||  ||||| | ||| ||||||||||||| ||||    
T  22642808 aatacaagatgaaatcaaatcaaatacttggtgactagcatacaaattcgactccctcgctaagcgatgggcgacataatttgtttgt 22642895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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