View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_5 (Length: 637)
Name: NF20321_low_5
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Complemental strand, 52807340 - 52806721
Alignment:
| Q |
1 |
gaaagcagtgaggcatagttattgttatttctaaagcctgtttactagagctctttcattctctctcactcattgaaactctttaagctagttccacgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807340 |
gaaagcagtgaggcatagttattgttatttctaaagcctgtttactagagctctttcattctctctcactcattgaaactctttaagctagttccacgtt |
52807241 |
T |
|
| Q |
101 |
tctttgatagaaaaacaaaagagagtaactaaactaaactagcttccaaagacaaagagggaagtgtatagggggtgtgtatatatcaagtgatgcgctc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807240 |
tctttgatagaaaaacaaaagagagtaactaaactaaactagcttccaaagacaaagagggaagtgtatagggggtgtgtatatatcaagtgatgcgctc |
52807141 |
T |
|
| Q |
201 |
aggaggttgtgcattgcagcagaccctcacagcagaggctgcttcagttttgaagcattctcttgtgttggctagaaggcgaggtcatccacaagtcact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807140 |
aggaggttgtgcattgcagcagaccctcacagcagaggctgcttcagttttgaagcattctcttgtgttggctagaaggcgaggtcatccacaagtcact |
52807041 |
T |
|
| Q |
301 |
cctctacatgtagccatcactttacttaccttaagactaagttccttcaaaagagcttgtcttaagtctcatcagcctcaccatcaaacttcacaacatc |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807040 |
cctctacatgtagccatcactttacttaccttaagactaagttccttcaaaagggcttgtcttaagtctcatcagcctcaccatcaaacttcacaacatc |
52806941 |
T |
|
| Q |
401 |
cacttcaatctagagctcttgagctttgtttcaatgtagctcttaataggttaccaacaacaccttctcctttgattcactctcagccttcactttccaa |
500 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806940 |
cacttcaatctagggctcttgagctttgtttcaatgtagctcttaataggttaccaacaacaccttctcctttgattcactctcagccttcactttccaa |
52806841 |
T |
|
| Q |
501 |
tgctctcattgctgcattgaaaagagcacaagctcatcaaagacgaggttccatagaacagcagcagcaacaacagcaaactgttcttactgtcaaagtt |
600 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52806840 |
tgctcttattgctgcattgaaaagagcacaagctcatcaaagacgaggttccatagaacagcagcagcaacaccagcaaactgttcttactgtcaaagtt |
52806741 |
T |
|
| Q |
601 |
gagcttgaacagcttattat |
620 |
Q |
| |
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|||||||||||||||||||| |
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| T |
52806740 |
gagcttgaacagcttattat |
52806721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 397 - 543
Target Start/End: Original strand, 16611234 - 16611389
Alignment:
| Q |
397 |
catccacttcaatctagagctcttgagctttgtttcaatgtagctcttaataggttaccaacaac-ac--cttctcctttgattcactctcag------c |
487 |
Q |
| |
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||||| ||||||| |||||||||||| ||||| |||||||| ||||||||||| | ||||| || || |||| |||||| |||| | ||| | |
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| T |
16611234 |
catcctcttcaatgtagagctcttgaactttgcttcaatgttgctcttaatagacttccaactactactacttcacctttgcttcaaccacagcatgttc |
16611333 |
T |
|
| Q |
488 |
cttcactttccaatgctctcattgctgcattgaaaagagcacaagctcatcaaaga |
543 |
Q |
| |
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|||||||||| ||||| ||||||||||| | |||||||| ||||||||||||||| |
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| T |
16611334 |
cttcactttctaatgcactcattgctgctcttaaaagagctcaagctcatcaaaga |
16611389 |
T |
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