View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_low_56 (Length: 312)

Name: NF20321_low_56
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_low_56
NF20321_low_56
[»] chr7 (27 HSPs)
chr7 (18-312)||(9568532-9568820)
chr7 (25-134)||(45640050-45640160)
chr7 (25-134)||(7401345-7401455)
chr7 (25-135)||(12772116-12772227)
chr7 (31-134)||(29625923-29626025)
chr7 (25-118)||(12640547-12640641)
chr7 (25-118)||(24781048-24781142)
chr7 (25-118)||(35645617-35645711)
chr7 (31-118)||(47999798-47999886)
chr7 (32-134)||(3766813-3766916)
chr7 (25-135)||(30388465-30388576)
chr7 (25-118)||(7691890-7691983)
chr7 (25-118)||(10244847-10244941)
chr7 (25-118)||(24508844-24508938)
chr7 (25-118)||(29617423-29617517)
chr7 (25-118)||(31026237-31026331)
chr7 (25-134)||(32619352-32619462)
chr7 (25-118)||(32676900-32676994)
chr7 (25-118)||(33996839-33996933)
chr7 (93-134)||(12364751-12364792)
chr7 (37-133)||(15106661-15106758)
chr7 (31-135)||(16961588-16961693)
chr7 (74-134)||(21066888-21066948)
chr7 (31-114)||(24732515-24732599)
chr7 (31-118)||(24880416-24880504)
chr7 (25-65)||(41699711-41699751)
chr7 (25-65)||(48674520-48674560)
[»] chr3 (30 HSPs)
chr3 (31-135)||(13644664-13644769)
chr3 (28-134)||(12894491-12894598)
chr3 (37-132)||(29496077-29496172)
chr3 (25-134)||(8964734-8964844)
chr3 (25-134)||(18194340-18194450)
chr3 (25-118)||(45701362-45701456)
chr3 (26-134)||(52974012-52974121)
chr3 (32-118)||(15975170-15975257)
chr3 (73-132)||(29559681-29559740)
chr3 (25-118)||(3894562-3894656)
chr3 (25-118)||(4139018-4139112)
chr3 (25-118)||(6919921-6920015)
chr3 (25-118)||(7269973-7270067)
chr3 (25-118)||(10176861-10176955)
chr3 (25-118)||(10482811-10482905)
chr3 (25-118)||(15299090-15299184)
chr3 (26-135)||(25279018-25279128)
chr3 (25-118)||(31327459-31327553)
chr3 (25-118)||(31327676-31327770)
chr3 (25-118)||(37800569-37800663)
chr3 (25-118)||(40933789-40933883)
chr3 (25-118)||(47098750-47098844)
chr3 (25-118)||(50234142-50234236)
chr3 (25-118)||(50496772-50496866)
chr3 (25-118)||(52410199-52410293)
chr3 (26-134)||(29373408-29373517)
chr3 (74-134)||(1743805-1743865)
chr3 (89-133)||(7251833-7251877)
chr3 (94-134)||(44364023-44364063)
chr3 (94-134)||(45871019-45871059)
[»] scaffold0028 (1 HSPs)
scaffold0028 (25-134)||(112110-112220)
[»] chr8 (23 HSPs)
chr8 (25-134)||(29733963-29734073)
chr8 (25-134)||(33838326-33838436)
chr8 (25-134)||(31450915-31451025)
chr8 (31-134)||(42880950-42881054)
chr8 (25-135)||(38344050-38344161)
chr8 (25-118)||(7816421-7816515)
chr8 (25-118)||(16432086-16432180)
chr8 (25-134)||(37717365-37717475)
chr8 (25-134)||(37090572-37090681)
chr8 (25-118)||(1937328-1937422)
chr8 (25-118)||(2787039-2787133)
chr8 (25-134)||(8034370-8034480)
chr8 (25-118)||(10736832-10736926)
chr8 (25-134)||(13406602-13406712)
chr8 (25-118)||(17698540-17698634)
chr8 (25-134)||(43283924-43284034)
chr8 (25-118)||(43656054-43656148)
chr8 (25-118)||(17027839-17027932)
chr8 (25-118)||(17558275-17558368)
chr8 (37-140)||(10200651-10200755)
chr8 (74-134)||(23339904-23339964)
chr8 (31-118)||(34158621-34158709)
chr8 (94-134)||(37092093-37092133)
[»] chr4 (18 HSPs)
chr4 (25-118)||(48615430-48615524)
chr4 (31-134)||(15208524-15208628)
chr4 (25-134)||(42231514-42231624)
chr4 (31-118)||(45112075-45112163)
chr4 (25-135)||(15064160-15064271)
chr4 (25-135)||(33530794-33530905)
chr4 (25-118)||(6371132-6371226)
chr4 (25-118)||(12581986-12582080)
chr4 (25-118)||(26919426-26919520)
chr4 (100-134)||(35976941-35976975)
chr4 (25-134)||(37251115-37251225)
chr4 (25-118)||(43147342-43147436)
chr4 (25-118)||(43596913-43597007)
chr4 (25-118)||(46774988-46775082)
chr4 (94-134)||(16193199-16193239)
chr4 (25-65)||(17709418-17709458)
chr4 (94-134)||(34862842-34862882)
chr4 (31-118)||(55251315-55251403)
[»] chr1 (24 HSPs)
chr1 (25-136)||(52369597-52369709)
chr1 (25-134)||(15775741-15775851)
chr1 (25-134)||(8984464-8984573)
chr1 (25-118)||(1151777-1151871)
chr1 (25-134)||(13773170-13773280)
chr1 (25-134)||(43884796-43884906)
chr1 (25-118)||(46965758-46965852)
chr1 (24-120)||(51933522-51933619)
chr1 (25-143)||(1570150-1570269)
chr1 (25-118)||(2277772-2277866)
chr1 (25-118)||(4482556-4482650)
chr1 (25-118)||(6438022-6438116)
chr1 (25-118)||(15819559-15819653)
chr1 (25-118)||(16343046-16343140)
chr1 (25-134)||(19011357-19011467)
chr1 (25-118)||(26584704-26584798)
chr1 (25-118)||(29188654-29188748)
chr1 (37-114)||(31818616-31818694)
chr1 (38-127)||(49424949-49425039)
chr1 (94-135)||(27178736-27178777)
chr1 (93-134)||(42127644-42127685)
chr1 (31-118)||(6129997-6130085)
chr1 (25-120)||(6213437-6213533)
chr1 (31-118)||(6702594-6702682)
[»] scaffold0038 (1 HSPs)
scaffold0038 (32-127)||(23370-23465)
[»] chr6 (14 HSPs)
chr6 (32-127)||(28222872-28222967)
chr6 (25-133)||(15285546-15285657)
chr6 (74-140)||(9888533-9888599)
chr6 (25-134)||(31802055-31802165)
chr6 (25-118)||(9704435-9704528)
chr6 (31-134)||(32049929-32050033)
chr6 (25-143)||(10934592-10934711)
chr6 (91-134)||(19618753-19618796)
chr6 (25-118)||(9246340-9246434)
chr6 (25-134)||(12284123-12284233)
chr6 (25-118)||(17441797-17441891)
chr6 (25-118)||(19953786-19953880)
chr6 (25-118)||(32611512-32611606)
chr6 (25-118)||(33573835-33573929)
[»] chr2 (9 HSPs)
chr2 (31-126)||(36005452-36005548)
chr2 (25-134)||(4562710-4562820)
chr2 (25-134)||(18278375-18278485)
chr2 (25-134)||(39408648-39408758)
chr2 (31-118)||(19684091-19684178)
chr2 (25-118)||(2643715-2643809)
chr2 (25-118)||(41509534-41509628)
chr2 (90-134)||(5062299-5062343)
chr2 (94-134)||(33041891-33041931)
[»] chr5 (22 HSPs)
chr5 (25-134)||(14641067-14641177)
chr5 (25-134)||(42525402-42525512)
chr5 (74-134)||(26912835-26912895)
chr5 (25-118)||(4745834-4745928)
chr5 (25-118)||(8968767-8968861)
chr5 (25-118)||(9835051-9835145)
chr5 (25-118)||(12463774-12463868)
chr5 (25-118)||(16386699-16386793)
chr5 (94-140)||(17064886-17064932)
chr5 (25-118)||(21918070-21918164)
chr5 (25-118)||(25400325-25400419)
chr5 (25-134)||(31074085-31074195)
chr5 (25-118)||(39886170-39886264)
chr5 (25-114)||(41156350-41156440)
chr5 (25-118)||(43580896-43580990)
chr5 (94-135)||(8752576-8752617)
chr5 (32-132)||(17175016-17175117)
chr5 (28-132)||(43328273-43328378)
chr5 (31-118)||(4417649-4417737)
chr5 (25-118)||(25648042-25648137)
chr5 (93-133)||(28581188-28581228)
chr5 (31-118)||(32505706-32505794)
[»] scaffold0608 (1 HSPs)
scaffold0608 (25-118)||(8984-9078)
[»] scaffold0460 (1 HSPs)
scaffold0460 (25-118)||(12477-12571)
[»] scaffold0121 (1 HSPs)
scaffold0121 (25-118)||(12012-12106)
[»] scaffold0024 (1 HSPs)
scaffold0024 (25-118)||(59801-59895)
[»] scaffold0187 (2 HSPs)
scaffold0187 (31-118)||(11084-11172)
scaffold0187 (31-118)||(21412-21500)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 9568532 - 9568820
Alignment:
Q  18 aactacgtagtgactagatctcacacaatttaattatatagaagtggaatatct-gagttcaaaccccggcttctatatataatata--caatatcccta 114  Q
    ||||||||||||||||||||| |||||||||||||||  |||| |||||||||| | |||||||||| | |||||||||||||||||  |||||||||||    
T  9568532 aactacgtagtgactagatcttacacaatttaattatggagaaatggaatatctagggttcaaaccctgacttctatatataatatatacaatatcccta 9568631  T
Q  115 ccaattcagttaaactcacgatgatatcacatgacaacttctaatcccttctacatcttcattctcattcaatgatttagccaattattaccacagcaac 214  Q
     ||| |||||||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  9568632 tcaactcagttaaactcacgaggatatcacatgacaacttctaatcccttc---------attctcattcaatgatttagccaattattaccacagcaac 9568722  T
Q  215 cgtatcttggtgttgaaggttttctcctccactagtggccacaaaatcaccacatgtagcaagtccaaaaataaaatctaccaaaacttaatttactt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9568723 cgtatcttggtgttgaaggttttctcctccactagtggccacaaaattaccacatgtagcaagtccaaaaataaaatttaccaaaacttaatttactt 9568820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 45640050 - 45640160
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||||||||| ||||||||||||||||||| ||||||||| | | | |||||| |||||| | | ||  |||||||||||||||||||||| || | ||    
T  45640050 tagtgactagagctcacacaatttaattatagagaagtggagtgtccggagttcgaaccccagttcctgcatataatatacaatatccctactaactaag 45640149  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  45640150 ttaagctcacg 45640160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 7401345 - 7401455
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || ||| ||||||||||   | ||  ||||||||||||||||||||||||| | ||    
T  7401345 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccgaggttcaaaccccaattcctgcatataatatacaatatccctaccaactgag 7401444  T
Q  124 ttaaactcacg 134  Q
    |||||||||||    
T  7401445 ttaaactcacg 7401455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 12772227 - 12772116
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| ||||||||||||||||||  ||||||||| ||| | | |||| ||||||| || ||  ||||||||| ||||||||||||||| | ||    
T  12772227 tagtggctagagctcacacaatttaattatggagaagtggagtatccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgag 12772128  T
Q  124 ttaaactcacga 135  Q
     ||| |||||||    
T  12772127 ctaagctcacga 12772116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 29626025 - 29625923
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaact 130  Q
    ||||| ||||||||||| ||||||| ||||||||| | || | |||| || ||||||| ||  ||||||||| ||||||||||||||| | |||||| ||    
T  29626025 ctagaactcacacaattaaattatagagaagtggagtgtcggggttcgaatcccggct-ctgcatataatatgcaatatccctaccaactgagttaagct 29625927  T
Q  131 cacg 134  Q
    ||||    
T  29625926 cacg 29625923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 12640547 - 12640641
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | |||| | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  12640547 tagtggctagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 12640641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 24781142 - 24781048
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| |||| | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  24781142 tagtggctagagctcacacaatttaattgtggagaagtggagtatccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 24781048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 35645711 - 35645617
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatct-gagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | ||  | |||| |||||||||| ||  |||||||||||||||||||||||||    
T  35645711 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccagggttcgaaccccggctcctgcatataatatacaatatccctaccaa 35645617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 47999886 - 47999798
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||||||||||||||||  ||||||||| | || | | ||| |||||| ||| ||| ||||||||| |||||||||||||||    
T  47999886 ctagagctcacacaatttaattatggagaagtggagtgtccgggattcgaaccccagctcctacatataatatgcaatatccctaccaa 47999798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 3766916 - 3766813
Alignment:
Q  32 tagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaact 130  Q
    |||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | |||||| ||    
T  3766916 tagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgagttaagct 3766817  T
Q  131 cacg 134  Q
    ||||    
T  3766816 cacg 3766813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 30388465 - 30388576
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | |||| | ||| |||||||||  ||  ||||||||| ||||||||||||||| | ||    
T  30388465 tagtggctagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgag 30388564  T
Q  124 ttaaactcacga 135  Q
     ||| |||||||    
T  30388565 ctaagctcacga 30388576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 7691983 - 7691890
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||||||||| ||||||||||| |||| |  ||||||||||| | | |||||| ||| |||||  ||||| ||||||| |||||||||||||||    
T  7691983 tagtgactagagctcacacaattaaattgtggagaagtggaatgtccggagttcgaactccggc-cctatacataatatgcaatatccctaccaa 7691890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 10244847 - 10244941
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||  | || | | ||| |||||||||| ||| ||||||||| |||||||||||||||    
T  10244847 tagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggctcctacatataatatgcaatatccctaccaa 10244941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 24508938 - 24508844
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||||| | | | |||| |||||||||| |   ||||||||| |||||||||||||||    
T  24508938 tagtggctagagctcacacaatttaattgtggagaagtggaatgtccggggttcgaaccccggctccatcatataatatgcaatatccctaccaa 24508844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 29617517 - 29617423
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  29617517 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 29617423  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 31026331 - 31026237
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  31026331 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 31026237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 32619462 - 32619352
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | | | | |||| |||||||||| ||| ||||||||| |||||||| || ||| | ||    
T  32619462 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctacatataatatgcaatatccttaacaactgag 32619363  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  32619362 ttaagctcacg 32619352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 32676900 - 32676994
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  32676900 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 32676994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 33996839 - 33996933
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| ||||||||||||||||||  ||||||||| | | | | |||| ||||||| || ||  ||||||||| |||||||||||||||    
T  33996839 tagtggctagagctcacacaatttaattatggagaagtggagtgtccagggttcgaaccccgactcctgcatataatatgcaatatccctaccaa 33996933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 12364792 - 12364751
Alignment:
Q  93 tatataatatacaatatccctaccaattcagttaaactcacg 134  Q
    |||||||||||||||||||||||||| | |||||| ||||||    
T  12364792 tatataatatacaatatccctaccaagtgagttaagctcacg 12364751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 15106661 - 15106758
Alignment:
Q  37 ctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaactcac 133  Q
    |||||||||||||||| |  ||||||||| | |||| | ||| ||||||| || ||  ||||||||| ||||||||||||||| | |||||| |||||    
T  15106661 ctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagttaagctcac 15106758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 16961588 - 16961693
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaac 129  Q
    ||||| ||| ||||||||||||||  ||||||||| | || | | |||||| |||| | |||  |||||| |||||||||||||||||| | || |||||    
T  16961588 ctagaactcgcacaatttaattatggagaagtggagtgtccgtggttcaaatcccgacctctgcatataaaatacaatatccctaccaactgagctaaac 16961687  T
Q  130 tcacga 135  Q
    ||||||    
T  16961688 tcacga 16961693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 21066948 - 21066888
Alignment:
Q  74 gttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaactcacg 134  Q
    |||| |||||||||  ||| ||||||||| ||||||||||||||| | || ||||||||||    
T  21066948 gttcgaaccccggcccctacatataatatgcaatatccctaccaactgagctaaactcacg 21066888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 24732515 - 24732599
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatc-tgagttcaaaccccggcttctatatataatatacaatatcccta 114  Q
    ||||| |||||||||||||||| |  ||||||||| | || || |||| ||||||  |||||| ||||||||| |||||||||||    
T  24732515 ctagagctcacacaatttaattgtggagaagtggagtgtcatgcgttcgaaccccaacttctacatataatatgcaatatcccta 24732599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 24880416 - 24880504
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| | | | | |||| |||||||||| ||  ||||||||| |||||||||||||||    
T  24880416 ctagagctcacacaatttaattgtggagaagtggagtgttcggggttcgaaccccggctcctgcatataatattcaatatccctaccaa 24880504  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 41699751 - 41699711
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtgga 65  Q
    ||||| ||||| ||||||||||||||||||| |||||||||    
T  41699751 tagtggctagagctcacacaatttaattatagagaagtgga 41699711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 48674520 - 48674560
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtgga 65  Q
    ||||||||||| ||||||||||||||||||  |||||||||    
T  48674520 tagtgactagagctcacacaatttaattatggagaagtgga 48674560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 13644664 - 13644769
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaac 129  Q
    ||||| ||||||||||||||||||||||||||||| | | |||||||| ||||||| |  ||  ||||||||||||||||||||||||||| || |||||    
T  13644664 ctagagctcacacaatttaattatatagaagtggagtgtactgagttcgaaccccgacccctgcatataatatacaatatccctaccaattgagataaac 13644763  T
Q  130 tcacga 135  Q
    ||||||    
T  13644764 tcacga 13644769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 12894491 - 12894598
Alignment:
Q  28 tgactagatctcacacaatttaattatatagaagtggaatatctga-gttcaaaccccggcttctatatataatatacaatatccctaccaattcagtta 126  Q
    |||||||| |||||||||||||||| |  ||||||| | |||| || |||| ||||||||| |||| |||||| || ||||||||||||||| | |||||    
T  12894491 tgactagagctcacacaatttaattgtggagaagtgaagtatccgaagttcgaaccccggcctctacatataaaatgcaatatccctaccaactgagtta 12894590  T
Q  127 aactcacg 134  Q
    | ||||||    
T  12894591 agctcacg 12894598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 29496077 - 29496172
Alignment:
Q  37 ctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaactca 132  Q
    |||| |||||||||||||  ||||||||| | |||| | || |||| || ||||| |||||||||| ||||||||||||||| | |||||||||||    
T  29496077 ctcatacaatttaattatgaagaagtggagtgtctgggatcgaacctcgacttctgtatataatatgcaatatccctaccaactgagttaaactca 29496172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 8964734 - 8964844
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | | | |||||| |||||||||| ||  |||| |||| ||||||||||||||| | ||    
T  8964734 tagtggctagagctcacacaatttaattgtggagaagtggagtgttcggagttcgaaccccggctcctgcatatgatatgcaatatccctaccaactgag 8964833  T
Q  124 ttaaactcacg 134  Q
     ||||||||||    
T  8964834 ctaaactcacg 8964844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 18194450 - 18194340
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  18194450 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 18194351  T
Q  124 ttaaactcacg 134  Q
     ||||||||||    
T  18194350 ctaaactcacg 18194340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 45701456 - 45701362
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| |||| | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  45701456 tagtggctagagctcacacaatttaattgtggagaagtggagtatccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 45701362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 52974012 - 52974121
Alignment:
Q  26 agtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagt 124  Q
    |||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | |||    
T  52974012 agtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgagt 52974111  T
Q  125 taaactcacg 134  Q
    ||| ||||||    
T  52974112 taagctcacg 52974121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 15975257 - 15975170
Alignment:
Q  32 tagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    |||| |||||||||||||||| |  ||||||||| | || ||| ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  15975257 tagagctcacacaatttaattgtgaagaagtggagtgtccgaggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 15975170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 29559681 - 29559740
Alignment:
Q  73 agttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaactca 132  Q
    ||||||||||||| | |||| ||||||||| ||||||||||||||| | |||||| ||||    
T  29559681 agttcaaaccccgacctctacatataatatgcaatatccctaccaactgagttaagctca 29559740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 3894656 - 3894562
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | | | |||||| |||||||||| ||  ||||||||| |||||||| ||||||    
T  3894656 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggagttcgaaccccggctcctgcatataatatgcaatatccataccaa 3894562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 4139112 - 4139018
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  4139112 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 4139018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 6919921 - 6920015
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | | | | |||| |||||||||| ||  ||||||||| |||||||||||||||    
T  6919921 tagtggctagagctcacacaatttaattgtggagaagtggagtgttcggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 6920015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 7270067 - 7269973
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctg-agttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | ||||| |||||| ||| ||  ||||||||| |||||||||||||||    
T  7270067 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggagttcgaaccccagctcctgcatataatatgcaatatccctaccaa 7269973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 10176861 - 10176955
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  10176861 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 10176955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 10482811 - 10482905
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctg-agttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | ||||| |||||| ||| ||  ||||||||| |||||||||||||||    
T  10482811 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggagttcgaaccccagctcctgcatataatatgcaatatccctaccaa 10482905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 15299184 - 15299090
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctga-gttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| ||||||||||| |||| || ||||||||| | || || |||| ||| ||| || ||  |||||||||||||||||||||||||    
T  15299184 tagtggctagagctcacacaattaaattgtagagaagtggagtgtccgaagttcgaactccgactgctgcatataatatacaatatccctaccaa 15299090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 25279018 - 25279128
Alignment:
Q  26 agtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagt 124  Q
    |||| ||||| |||||||||||||||| |  ||||||||  | || | | |||||| ||||||  ||| ||||||||||||||||||||||||| | ||     
T  25279018 agtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcaaatcccggcccctacatataatatacaatatccctaccaactaagc 25279117  T
Q  125 taaactcacga 135  Q
    ||| |||||||    
T  25279118 taagctcacga 25279128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 31327459 - 31327553
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  31327459 tagtggctagagctcacacaatttaattgtggagaagtggagtttccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 31327553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 31327676 - 31327770
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  31327676 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 31327770  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 37800569 - 37800663
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  37800569 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 37800663  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 40933789 - 40933883
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  40933789 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 40933883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 47098844 - 47098750
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | |||| | ||| |||||||||  ||  ||||||||| |||||||||||||||    
T  47098844 tagtggctagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccggcccctgcatataatatgcaatatccctaccaa 47098750  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 50234236 - 50234142
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  50234236 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 50234142  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 50496772 - 50496866
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  50496772 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 50496866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 52410199 - 52410293
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatct-gagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | ||| | |||| || ||||||| ||  ||||||||| |||||||||||||||    
T  52410199 tagtggctagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaatcccggctcctgcatataatatgcaatatccctaccaa 52410293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 29373408 - 29373517
Alignment:
Q  26 agtgactagatctcacacaatttaattatatagaagtggaatatctga-gttcaaaccccggcttctatatataatatacaatatccctaccaattcagt 124  Q
    |||||||| | |||||||||||||||| |  ||||||||  | ||||| |||| |||||||||  ||  ||||||||| |||||||| |||||| | |||    
T  29373408 agtgactatagctcacacaatttaattgtggagaagtggggtgtctgaggttcgaaccccggcccctgcatataatatgcaatatccttaccaactgagt 29373507  T
Q  125 taaactcacg 134  Q
    ||| ||||||    
T  29373508 taagctcacg 29373517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 1743805 - 1743865
Alignment:
Q  74 gttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaactcacg 134  Q
    |||| |||||||||  ||| |||||| || ||||||||||||||||| |||||| ||||||    
T  1743805 gttcgaaccccggcccctacatataaaatgcaatatccctaccaattgagttaagctcacg 1743865  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 7251877 - 7251833
Alignment:
Q  89 tctatatataatatacaatatccctaccaattcagttaaactcac 133  Q
    |||||||||||||| |||||||||||| | || ||||||||||||    
T  7251877 tctatatataatatgcaatatccctactatttaagttaaactcac 7251833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 44364063 - 44364023
Alignment:
Q  94 atataatatacaatatccctaccaattcagttaaactcacg 134  Q
    ||||||||| ||||||||||||||| | |||||||||||||    
T  44364063 atataatatgcaatatccctaccaactgagttaaactcacg 44364023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 45871059 - 45871019
Alignment:
Q  94 atataatatacaatatccctaccaattcagttaaactcacg 134  Q
    ||||||||||||||||||||||||| | || ||||||||||    
T  45871059 atataatatacaatatccctaccaactgagctaaactcacg 45871019  T

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Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 112220 - 112110
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| |||| ||| |||||||| ||||| ||  ||||||||| ||||||||||||||| | ||    
T  112220 tagtggctagagctcacacaatttaattgtggagaagtggagtatccgagattcaaacctcggctcctgcatataatatgcaatatccctaccaactgag 112121  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  112120 ttaagctcacg 112110  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 29733963 - 29734073
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| || ||||||||| |||| | | ||| ||||||| || ||  |||||||||||||||||| |||||| | ||    
T  29733963 tagtggctagagctcacacaatttaattgtagagaagtggagtatccggggttcgaaccccgactcctgcatataatatacaatatccttaccaactgag 29734062  T
Q  124 ttaaactcacg 134  Q
    |||||||||||    
T  29734063 ttaaactcacg 29734073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 33838436 - 33838326
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctg-agttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  |||| |||| | |||| ||||| |||||||||||||| ||||||| | ||||||||||||||| | ||    
T  33838436 tagtggctagagctcacacaatttaattgtggagaaatggagtgtctggagttcgaaccccggcttctacatataatttgcaatatccctaccaactgag 33838337  T
Q  124 ttaaactcacg 134  Q
     ||||||||||    
T  33838336 ctaaactcacg 33838326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 31450915 - 31451025
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctg-agttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | ||||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  31450915 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggagttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 31451014  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  31451015 ttaagctcacg 31451025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 42881054 - 42880950
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaac 129  Q
    ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||| ||||||||| ||||||||||||||| | |||||| |    
T  42881054 ctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctacatataatatgcaatatccctaccaactgagttaagc 42880955  T
Q  130 tcacg 134  Q
    |||||    
T  42880954 tcacg 42880950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 38344161 - 38344050
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | |||| | ||| |||||| ||| ||  ||||||||| ||||||||||||||| | ||    
T  38344161 tagtggctagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccagctcctgcatataatatgcaatatccctaccaactgag 38344062  T
Q  124 ttaaactcacga 135  Q
    |||| |||||||    
T  38344061 ttaagctcacga 38344050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 7816515 - 7816421
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || ||| ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  7816515 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccgaggttcgaaccccggctcctgcatataatattcaatatccctaccaa 7816421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 16432086 - 16432180
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctga-gttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| ||||||||||| ||||||  ||||||||| | || || |||| |||||||||| ||  ||||||||| |||||||||||||||    
T  16432086 tagtggctagagctcacacaattaaattatggagaagtggagtgtccgatgttcgaaccccggctcctgcatataatatgcaatatccctaccaa 16432180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 37717475 - 37717365
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  37717475 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 37717376  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  37717375 ttaagctcacg 37717365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 37090572 - 37090681
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcagt 124  Q
    ||||| ||||| |||||| ||||||||| |  ||| ||||| | |  | |||| ||||||| || ||  ||||||||||||||||||||||||| | |||    
T  37090572 tagtggctagagctcacataatttaattgtggagatgtggagtgttggggttcgaaccccgactcctgcatataatatacaatatccctaccaactgagt 37090671  T
Q  125 taaactcacg 134  Q
    ||||||||||    
T  37090672 taaactcacg 37090681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 1937422 - 1937328
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| || ||||||||| | | | | |||| ||||||| || ||  ||||||||| |||||||||||||||    
T  1937422 tagtggctagagctcacacaatttaattgtagagaagtggagtgtgcggggttcgaaccccgcctcctgcatataatatgcaatatccctaccaa 1937328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 2787039 - 2787133
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  2787039 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 2787133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 8034370 - 8034480
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctga-gttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||  | ||||  |||| |||||||||  ||  ||||||||| ||||||||||||||| | ||    
T  8034370 tagtggctagaactcacacaatttaattgtggagaagtggggtgtctggtgttcgaaccccggcccctgcatataatatgcaatatccctaccaactgag 8034469  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  8034470 ttaagctcacg 8034480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 10736832 - 10736926
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  10736832 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 10736926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 13406712 - 13406602
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatct-gagttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | ||  | |||| ||| |||||| ||  ||||||||| ||||||||||||||| | ||    
T  13406712 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccagggttcgaactccggctcctgcatataatatgcaatatccctaccaactgag 13406613  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  13406612 ttaagctcacg 13406602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 17698634 - 17698540
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  17698634 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaa 17698540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 43283924 - 43284034
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  |||| |||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  43283924 tagtggctagagctcacacaatttaattgtggagaaatggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 43284023  T
Q  124 ttaaactcacg 134  Q
     ||||||||||    
T  43284024 ctaaactcacg 43284034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 43656148 - 43656054
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| ||||||||||| |||| |  ||||||||||| || ||| ||| ||||||| |  ||| ||||||||| |||||||||||||||    
T  43656148 tagtggctagagctcacacaattaaattgtggagaagtggaatgtccgaggttcgaaccccgacccctacatataatatgcaatatccctaccaa 43656054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 17027839 - 17027932
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||  | || | |||| |||||||||| |   ||||||||| |||||||||||||||    
T  17027839 tagtggctagagctcacacaatttaattgtggagaagtggggtgtccgggttcgaaccccggctccggcatataatatgcaatatccctaccaa 17027932  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 17558275 - 17558368
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||  | || | |||| |||||||||| |   ||||||||| |||||||||||||||    
T  17558275 tagtggctagagctcacacaatttaattgtggagaagtggggtgtccgggttcgaaccccggctccggcatataatatgcaatatccctaccaa 17558368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 10200651 - 10200755
Alignment:
Q  37 ctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaactcacga 135  Q
    ||||||||||||||||||  ||||||||| | | | | |||| |||||||||| ||  ||||||||| ||||||| ||||||| | || ||| |||||||    
T  10200651 ctcacacaatttaattatggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatctctaccaactgagctaagctcacga 10200750  T
Q  136 tgata 140  Q
     ||||    
T  10200751 ggata 10200755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 23339904 - 23339964
Alignment:
Q  74 gttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaactcacg 134  Q
    |||| |||||||||  ||| ||||||||||||||||| ||||||| | |||||| ||||||    
T  23339904 gttcgaaccccggcccctacatataatatacaatatctctaccaactgagttaagctcacg 23339964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 34158621 - 34158709
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| ||| | | |||| ||||||| || ||  ||||||||| |||||||||||||||    
T  34158621 ctagagctcacacaatttaattgtggagaagtggagtatgcggggttcgaaccccgcctcctgcatataatatgcaatatccctaccaa 34158709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 37092133 - 37092093
Alignment:
Q  94 atataatatacaatatccctaccaattcagttaaactcacg 134  Q
    ||||||||||||||||||||||||| | || ||||||||||    
T  37092133 atataatatacaatatccctaccaactgagctaaactcacg 37092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 48615430 - 48615524
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||||||||| |||||||||||||||| |  ||||||||| |||| | | ||| |||||||||||||  ||||||||| |||||||||||||||    
T  48615430 tagtgactagagctcacacaatttaattgtggagaagtggagtatccggggttcgaaccccggcttctgcatataatatgcaatatccctaccaa 48615524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 15208628 - 15208524
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaac 129  Q
    ||||| |||||||||||||||| |  ||||||||| | || ||| ||| |||||||| | ||||||||||||| ||||||||||||| | | |||||| |    
T  15208628 ctagagctcacacaatttaattgtggagaagtggagtgtccgaggttcgaaccccggttcctatatataatatgcaatatccctacccactgagttaagc 15208529  T
Q  130 tcacg 134  Q
    |||||    
T  15208528 tcacg 15208524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 42231624 - 42231514
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||||||||| |||||||||||||||| |  ||||||||| | | | | |||| |||||||||| ||  ||||||||| |||||| |||||||| | ||    
T  42231624 tagtgactagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatattcctaccaactgag 42231525  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  42231524 ttaagctcacg 42231514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 45112075 - 45112163
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||||||||||||||||  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  45112075 ctagagctcacacaatttaattatggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 45112163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 15064160 - 15064271
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| ||||||||||||||||||  ||||||||| |||| | | ||| |||| || || ||  ||||||||| |||||| |||||||| | ||    
T  15064160 tagtggctagagctcacacaatttaattatggagaagtggagtatccggggttcgaacctcgactcctgcatataatatgcaatattcctaccaactgag 15064259  T
Q  124 ttaaactcacga 135  Q
     |||||||||||    
T  15064260 ctaaactcacga 15064271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 33530905 - 33530794
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| ||||||||||| ||||||  ||||||||| |||| | | ||| |||||||    ||| ||||||||| ||||||||||||||||| ||    
T  33530905 tagtggctagagctcacacaattcaattatggagaagtggagtatccggggttcgaaccccgatccctacatataatatgcaatatccctaccaattaag 33530806  T
Q  124 ttaaactcacga 135  Q
     ||| |||||||    
T  33530805 ctaagctcacga 33530794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 6371226 - 6371132
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  6371226 tagtggctagagctcacacaatttaattgtgaagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 6371132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 12581986 - 12582080
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  12581986 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 12582080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 26919426 - 26919520
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctg-agttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | ||||| |||||| ||| ||  ||||||||| |||||||||||||||    
T  26919426 tagtggctagagctcacacaatttaattgtgaagaagtggagtgtccggagttcgaaccccagctcctgcatataatatgcaatatccctaccaa 26919520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 35976941 - 35976975
Alignment:
Q  100 tatacaatatccctaccaattcagttaaactcacg 134  Q
    ||||||||||||||||||||| |||||||||||||    
T  35976941 tatacaatatccctaccaattgagttaaactcacg 35976975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 37251225 - 37251115
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctga-gttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| |||||  ||||||||||||||| |  ||||||||| | || || |||| |||||||||| ||  ||| ||||| ||||||||||||||| | ||    
T  37251225 tagtggctagagttcacacaatttaattgtggagaagtggagtgtccgatgttcgaaccccggctcctgcataaaatatgcaatatccctaccaactgag 37251126  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  37251125 ttaagctcacg 37251115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 43147342 - 43147436
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  43147342 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 43147436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 43597007 - 43596913
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  43597007 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 43596913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 46774988 - 46775082
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  46774988 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 46775082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 16193199 - 16193239
Alignment:
Q  94 atataatatacaatatccctaccaattcagttaaactcacg 134  Q
    |||||||||||||||||| |||||| | |||||||||||||    
T  16193199 atataatatacaatatccttaccaactgagttaaactcacg 16193239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 17709418 - 17709458
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtgga 65  Q
    ||||||||||| |||||||||||||||| || |||||||||    
T  17709418 tagtgactagagctcacacaatttaattgtagagaagtgga 17709458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 34862882 - 34862842
Alignment:
Q  94 atataatatacaatatccctaccaattcagttaaactcacg 134  Q
    |||||| |||||||||||||||||||| |||||| ||||||    
T  34862882 atataaaatacaatatccctaccaattgagttaagctcacg 34862842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 55251315 - 55251403
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  55251315 ctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 55251403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 52369709 - 52369597
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatct-gagttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| ||||||||||||||||||  ||||||||| ||||  | |||| |||| ||||| ||  ||||||||| ||||||||||||||| | ||    
T  52369709 tagtggctagagctcacacaatttaattatggagaagtggagtatccagggttcgaacctcggctcctgcatataatatgcaatatccctaccaactgag 52369610  T
Q  124 ttaaactcacgat 136  Q
     ||||||||||||    
T  52369609 ctaaactcacgat 52369597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 15775851 - 15775741
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| | ||||||| || | |||| | ||| ||| |||||| ||  ||||||||| ||||||||||||||||| ||    
T  15775851 tagtggctagagctcacacaatttaattgtgtagaagttgagtgtctggggttcgaactccggctcctgcatataatatgcaatatccctaccaattgag 15775752  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  15775751 ttaagctcacg 15775741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 8984464 - 8984573
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcagt 124  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | |||| |||||||||| ||  ||||||||| |||||||||| |||| | |||    
T  8984464 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccgggttcgaaccccggctcctgcatataatatgcaatatccctgccaactgagt 8984563  T
Q  125 taaactcacg 134  Q
    ||| ||||||    
T  8984564 taagctcacg 8984573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 1151871 - 1151777
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||||||||| |||||||||||||||| |  ||||||||| | || | | ||| || ||||||| || |||||||||| |||||||||||||||    
T  1151871 tagtgactagagctcacacaatttaattgtgaagaagtggagtgtccggggttcgaatcccggctcctgtatataatatgcaatatccctaccaa 1151777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 13773280 - 13773170
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  13773280 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 13773181  T
Q  124 ttaaactcacg 134  Q
     ||||||||||    
T  13773180 ctaaactcacg 13773170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 43884906 - 43884796
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatct-gagttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | ||  | |||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  43884906 tagtggctagaactcacacaatttaattgtggagaagtggagtgtccagggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 43884807  T
Q  124 ttaaactcacg 134  Q
     ||||||||||    
T  43884806 ctaaactcacg 43884796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 46965852 - 46965758
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| ||||||||||||||||||  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  46965852 tagtggctagagctcacacaatttaattatggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 46965758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 51933619 - 51933522
Alignment:
Q  24 gtagtgactagatctcacacaatttaattatatagaagtggaatatctg-agttcaaaccccggcttctatatataatatacaatatccctaccaatt 120  Q
    |||||| ||||| |||||||||||||||| |  |||| |||||| |||| ||||| |||||||  | ||  ||||||||| |||||||||||||||||    
T  51933619 gtagtggctagacctcacacaatttaattgtggagaaatggaatgtctggagttcgaaccccgattcctgcatataatatgcaatatccctaccaatt 51933522  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 1570150 - 1570269
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  1570150 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 1570249  T
Q  124 ttaaactcacgatgatatca 143  Q
     ||| ||||||  |||||||    
T  1570250 ctaagctcacggggatatca 1570269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 2277866 - 2277772
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  2277866 tagtggctagagctcacacaatttaattgtggagaagtggagtctccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 2277772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 4482556 - 4482650
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| ||| | | |||| ||| |||||| ||  ||||||||| |||||||||||||||    
T  4482556 tagtggctagagctcacacaatttaattgtggagaagtggagtatccggggttcgaactccggctcctgcatataatatgcaatatccctaccaa 4482650  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 6438022 - 6438116
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  6438022 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 6438116  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 15819559 - 15819653
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  15819559 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 15819653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 16343140 - 16343046
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  16343140 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 16343046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 19011467 - 19011357
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| ||||||||||| |||| |  ||||||||| |||||| | ||| |||||| ||  ||  ||||||||| ||||||||||||||||| ||    
T  19011467 tagtggctagagctcacacaattaaattgtggagaagtggagtatctggggttcgaaccccagcccctgcatataatatgcaatatccctaccaattgag 19011368  T
Q  124 ttaaactcacg 134  Q
     ||| ||||||    
T  19011367 ctaagctcacg 19011357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 26584704 - 26584798
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| || ||||||||| | | | | |||| ||||||| || ||  ||||||||| |||||||||||||||    
T  26584704 tagtggctagagctcacacaatttaattgtagagaagtggagtgtgcggggttcgaaccccgcctcctgcatataatatgcaatatccctaccaa 26584798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 29188748 - 29188654
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| ||| | | |||| |||||| ||| ||  ||||||||| |||||||||||||||    
T  29188748 tagtggctagagctcacacaatttaattgtggagaagtggagtatccggggttcgaacccctgctcctgcatataatatgcaatatccctaccaa 29188654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 31818694 - 31818616
Alignment:
Q  37 ctcacacaatttaattatatagaagtggaatatct-gagttcaaaccccggcttctatatataatatacaatatcccta 114  Q
    ||||||||||| ||||||| ||||||||| ||||| | |||| |||||||||| ||  ||||||||| |||||| ||||    
T  31818694 ctcacacaattaaattatagagaagtggagtatctggggttcgaaccccggctcctgcatataatatgcaatattccta 31818616  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 49424949 - 49425039
Alignment:
Q  38 tcacacaatttaattatatagaagtggaatatctga-gttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaa 127  Q
    |||||||||||||||||  ||||||||| | || || |||| ||| || | ||||  ||||||||| ||||||||||||||||| ||||||    
T  49424949 tcacacaatttaattatggagaagtggagtgtccgatgttcgaactccagtttctgcatataatatgcaatatccctaccaattgagttaa 49425039  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 27178736 - 27178777
Alignment:
Q  94 atataatatacaatatccctaccaattcagttaaactcacga 135  Q
    |||||||||||||||||| |||||||| |||||| |||||||    
T  27178736 atataatatacaatatccttaccaattgagttaagctcacga 27178777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 42127644 - 42127685
Alignment:
Q  93 tatataatatacaatatccctaccaattcagttaaactcacg 134  Q
    |||||||||| |||||||| |||||||| |||||||||||||    
T  42127644 tatataatatgcaatatccataccaattgagttaaactcacg 42127685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 6129997 - 6130085
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctg-agttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| | || | ||||| ||||||| || ||  ||||||||| |||||||||||||||    
T  6129997 ctagagctcacacaatttaattgtggagaagtggagtgtccggagttcgaaccccgactcctgcatataatatgcaatatccctaccaa 6130085  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 6213533 - 6213437
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaatt 120  Q
    ||||| ||||| |||||||||||||||| |  ||||||||  |||| | | ||||||||| | |  || |||||||||| |||||||||||||||||    
T  6213533 tagtggctagaactcacacaatttaattgtgaagaagtggggtatccgggattcaaaccctgacccctgtatataatatgcaatatccctaccaatt 6213437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 6702682 - 6702594
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| | |||| | ||| ||||||| || ||  ||||||||| |||||||||||||||    
T  6702682 ctagagctcacacaatttaattgtgaagaagtggagtgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaa 6702594  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 23465 - 23370
Alignment:
Q  32 tagatctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaa 127  Q
    |||| ||||||||||||||||||  ||||||||| | || | |||| ||||||||| |||  ||||||||| ||||||||||||||| | ||||||    
T  23465 tagagctcacacaatttaattatggagaagtggagtgtccgggttcgaaccccggcctctgcatataatatgcaatatccctaccaactgagttaa 23370  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 28222967 - 28222872
Alignment:
Q  32 tagatctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaa 127  Q
    |||| ||||||||||||||||||  ||||||||| | || | |||| ||||||||| |||  ||||||||| ||||||||||||||| | ||||||    
T  28222967 tagagctcacacaatttaattatggagaagtggagtgtccgggttcgaaccccggcctctgcatataatatgcaatatccctaccaactgagttaa 28222872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 15285657 - 15285546
Alignment:
Q  25 tagtgactagatctcacacaatttaattatataga--agtggaatatct-gagttcaaaccccggcttctatatataatatacaatatccctaccaattc 121  Q
    ||||| |||| |||||||||||| |||||||||||  |||||| | ||| | |||||||||||||||  |  |||||||||  |||||||||||||| |     
T  15285657 tagtggctagttctcacacaattgaattatatagagaagtggagtctctagggttcaaaccccggctcatgcatataatatgtaatatccctaccaactg 15285558  T
Q  122 agttaaactcac 133  Q
    ||||||||||||    
T  15285557 agttaaactcac 15285546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 9888533 - 9888599
Alignment:
Q  74 gttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaactcacgatgata 140  Q
    |||||||||||| || ||  ||| ||||||||||||||||||||| | |||||||||||||| ||||    
T  9888533 gttcaaaccccgactcctgcatagaatatacaatatccctaccaactgagttaaactcacgaggata 9888599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 31802165 - 31802055
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  31802165 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 31802066  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  31802065 ttaagctcacg 31802055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 9704528 - 9704435
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||| ||| |||| | |||| |||| ||||| ||  ||||||||| |||||||||||||||    
T  9704528 tagtggctagagctcacacaatttaattgtggagaagcggagtatcggggttcgaacctcggctcctgcatataatatgcaatatccctaccaa 9704435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 32049929 - 32050033
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaac 129  Q
    ||||| |||||||||||||||| |  ||||||||| | | | |||||| |||||||||| ||  ||||||||| ||||||||||||||  | |||||| |    
T  32049929 ctagagctcacacaatttaattgtggagaagtggagtgttcggagttcgaaccccggctcctgcatataatatgcaatatccctaccagctgagttaagc 32050028  T
Q  130 tcacg 134  Q
    |||||    
T  32050029 tcacg 32050033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 10934711 - 10934592
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  10934711 tagtggctagaactcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 10934612  T
Q  124 ttaaactcacgatgatatca 143  Q
     ||| ||||||  |||||||    
T  10934611 ctaagctcacggggatatca 10934592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 19618753 - 19618796
Alignment:
Q  91 tatatataatatacaatatccctaccaattcagttaaactcacg 134  Q
    |||||||||||| ||||||||||||||||| || ||||||||||    
T  19618753 tatatataatatgcaatatccctaccaattgagctaaactcacg 19618796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 9246340 - 9246434
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||||||||| |  ||||||||| | | | | |||| ||||||| || ||  ||||||||| |||||||||||||||    
T  9246340 tagtggctagatctcacacaatttaattgtggagaagtggagtgtgcggggttcgaaccccgcctcctgcatataatatgcaatatccctaccaa 9246434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 12284233 - 12284123
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctg-agttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | ||||| ||||||| |  ||  ||||||||| ||||||||||||||| | ||    
T  12284233 tagtggctagagctcacacaatttaattgtggagaagtggagtttccggagttcgaaccccgacacctgcatataatattcaatatccctaccaactgag 12284134  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  12284133 ttaagctcacg 12284123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 17441797 - 17441891
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  17441797 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 17441891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 19953786 - 19953880
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  19953786 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 19953880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 32611512 - 32611606
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  32611512 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 32611606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 33573929 - 33573835
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatct-gagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | ||  | |||| |||||||||| ||  ||||||||| |||||||||||||||    
T  33573929 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccagggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 33573835  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 36005548 - 36005452
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagtta 126  Q
    ||||| |||||||||||||||| |  ||||||||| | |||| | ||| |||||||||| ||  ||||||||| ||||||||||||||||| |||||    
T  36005548 ctagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccggctcctgcatataatatgcaatatccctaccaattgagtta 36005452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 4562710 - 4562820
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  4562710 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 4562809  T
Q  124 ttaaactcacg 134  Q
     ||||||||||    
T  4562810 ctaaactcacg 4562820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 18278375 - 18278485
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  18278375 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 18278474  T
Q  124 ttaaactcacg 134  Q
     ||||||||||    
T  18278475 ctaaactcacg 18278485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 39408648 - 39408758
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | |||| | ||| ||||||||||  |  ||||||||| ||||||||||||||| | ||    
T  39408648 tagtggctagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccggctcttgcatataatatgcaatatccctaccaactgag 39408747  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  39408748 ttaagctcacg 39408758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 19684178 - 19684091
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| | || | |||| |||||| ||| ||  ||||||||| |||||||||||||||    
T  19684178 ctagagctcacacaatttaattgtggagaagtggagtgtcggggttcgaaccccagctcctgcatataatatgcaatatccctaccaa 19684091  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 2643809 - 2643715
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  2643809 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 2643715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 41509628 - 41509534
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  41509628 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 41509534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 5062343 - 5062299
Alignment:
Q  90 ctatatataatatacaatatccctaccaattcagttaaactcacg 134  Q
    ||||||||||||| ||||||||||||||| | |||||| ||||||    
T  5062343 ctatatataatatgcaatatccctaccaactgagttaagctcacg 5062299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 33041891 - 33041931
Alignment:
Q  94 atataatatacaatatccctaccaattcagttaaactcacg 134  Q
    ||||||||| ||||||||||||||| | |||||||||||||    
T  33041891 atataatatgcaatatccctaccaactgagttaaactcacg 33041931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 14641067 - 14641177
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| ||| |||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||||| ||    
T  14641067 tagtggctagagctcgcacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaattgag 14641166  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  14641167 ttaagctcacg 14641177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 42525512 - 42525402
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| ||||||||||||||| | ||    
T  42525512 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 42525413  T
Q  124 ttaaactcacg 134  Q
     ||||||||||    
T  42525412 ctaaactcacg 42525402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 26912895 - 26912835
Alignment:
Q  74 gttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaactcacg 134  Q
    |||| |||||||||  ||| ||||||||| ||||||||||||||||| |||||| ||||||    
T  26912895 gttcgaaccccggcccctacatataatatgcaatatccctaccaattgagttaagctcacg 26912835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 4745834 - 4745928
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  4745834 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctccttcatataatatgcaatatccctaccaa 4745928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 8968861 - 8968767
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  8968861 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 8968767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 9835145 - 9835051
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  9835145 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 9835051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 12463868 - 12463774
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  12463868 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 12463774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 16386699 - 16386793
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| ||| | | |||| |||||| ||| ||  ||||||||| |||||||||||||||    
T  16386699 tagtggctagagctcacacaatttaattgtggagaagtggagtatccggggttcgaaccccagctcctgcatataatatgcaatatccctaccaa 16386793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 17064886 - 17064932
Alignment:
Q  94 atataatatacaatatccctaccaattcagttaaactcacgatgata 140  Q
    ||||||||| ||||||||||||||||| |||||| ||||||| ||||    
T  17064886 atataatatgcaatatccctaccaattgagttaagctcacgaggata 17064932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 21918164 - 21918070
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||||||||| |||||||||||||||| |  ||||||||| | | | | |||| |||||| ||| ||  ||||||||| |||||||||||||||    
T  21918164 tagtgactagagctcacacaatttaattgtggagaagtggagtgtccagggttcgaaccccagctcctgcatataatatgcaatatccctaccaa 21918070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 25400325 - 25400419
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  25400325 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 25400419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 31074085 - 31074195
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaattcag 123  Q
    ||||| ||||| | ||| |||||||||| || ||||||||| ||| | | |||| |||||||||| ||| |||||| ||  |||||||||||||| | ||    
T  31074085 tagtggctagagcgcacgcaatttaattgtagagaagtggagtattcggggttcgaaccccggctcctacatataaaatgtaatatccctaccaactgag 31074184  T
Q  124 ttaaactcacg 134  Q
    |||| ||||||    
T  31074185 ttaagctcacg 31074195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 39886170 - 39886264
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||| ||| ||| ||||||||| |||||||||||||||    
T  39886170 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccagctcctacatataatatgcaatatccctaccaa 39886264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 41156440 - 41156350
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctg-agttcaaaccccggcttctatatataatatacaatatcccta 114  Q
    ||||||||||| ||||||| |||||||| |  ||||||||| | || | ||||| |||||||||| ||  ||||||||| |||||||||||    
T  41156440 tagtgactagagctcacacgatttaattgtggagaagtggagtgtccggagttcgaaccccggctcctgcatataatatgcaatatcccta 41156350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 43580990 - 43580896
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  43580990 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaa 43580896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 8752576 - 8752617
Alignment:
Q  94 atataatatacaatatccctaccaattcagttaaactcacga 135  Q
    |||||||||| |||||||||||||||| || |||||||||||    
T  8752576 atataatatataatatccctaccaattgagctaaactcacga 8752617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 17175016 - 17175117
Alignment:
Q  32 tagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagttaaact 130  Q
    ||||||||||||||| ||||| |  ||||||||| | || ||| ||| |||||||||  ||  |||||| || ||||||||||||||| | |||||||||    
T  17175016 tagatctcacacaatataattgtggagaagtggagtgtccgaggttcgaaccccggcccctgcatataacatgcaatatccctaccaactgagttaaact 17175115  T
Q  131 ca 132  Q
    ||    
T  17175116 ca 17175117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 43328378 - 43328273
Alignment:
Q  28 tgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaattcagtta 126  Q
    ||||||||  |||||||||| |||| || ||||||||| | |||||| ||||||| ||||    || ||||||||||||||||| ||||||| | |||||    
T  43328378 tgactagagttcacacaattcaattgtagagaagtggagtgtctgaggttcaaactccggaccttacatataatatacaatatctctaccaactgagtta 43328279  T
Q  127 aactca 132  Q
    | ||||    
T  43328278 agctca 43328273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 4417649 - 4417737
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  4417649 ctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 4417737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 25648042 - 25648137
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatct--gagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | |||  | |||| |||||||||| ||  || |||||| |||||||||||||||    
T  25648042 tagtggctagagctcacacaatttaattgtggagaagtggagtgtctgggggttcgaaccccggctcctgcatgtaatatgcaatatccctaccaa 25648137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 28581228 - 28581188
Alignment:
Q  93 tatataatatacaatatccctaccaattcagttaaactcac 133  Q
    |||||||||| ||||||||||||||||| |||||| |||||    
T  28581228 tatataatatgcaatatccctaccaattaagttaagctcac 28581188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 32505794 - 32505706
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  32505794 ctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 32505706  T

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Target: scaffold0608 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 9078 - 8984
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| ||| | | |||| ||| |||||| ||  ||||||||| |||||||||||||||    
T  9078 tagtggctagagctcacacaatttaattgtggagaagtggagtatccggggttcgaactccggctcctgcatataatatgcaatatccctaccaa 8984  T

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Target: scaffold0460 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 12571 - 12477
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatat-ctgagttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||||| | | | |||| ||||||| || ||  ||||||||| |||||||||||||||    
T  12571 tagtggctagagctcacacaatttaattgtggagaagtggaatgtgcggggttcgaaccccgcctcctgcatataatatgcaatatccctaccaa 12477  T

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Target: scaffold0121 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 12106 - 12012
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||  ||||||||||||||| |  ||||||||| | || | | |||||||||||||| ||  ||||||||| |||||||||||||||    
T  12106 tagtggctagagttcacacaatttaattgtggagaagtggagtgtccggggttcaaaccccggctcctgcatataatatgcaatatccctaccaa 12012  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 59895 - 59801
Alignment:
Q  25 tagtgactagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  59895 tagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 59801  T

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Target: scaffold0187 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 11084 - 11172
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  11084 ctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 11172  T

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Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 21412 - 21500
Alignment:
Q  31 ctagatctcacacaatttaattatatagaagtggaatatctgag-ttcaaaccccggcttctatatataatatacaatatccctaccaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| | || | | ||| |||||||||| ||  ||||||||| |||||||||||||||    
T  21412 ctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaa 21500  T

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