View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_58 (Length: 312)
Name: NF20321_low_58
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_58 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 15314054 - 15313774
Alignment:
| Q |
16 |
atctagttgatatcattacaaatagagcagcaacccaacattgttcacagtatcatcaaaacactcatagaataaacaaaatatatagtcccaatcacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15314054 |
atctagttgatatcattacaaatagagcagcaacccaacattgttgacagtagcatcaaaacactcatagaataaacaaaatctatagtccaaatcacaa |
15313955 |
T |
|
| Q |
116 |
caaatcctatttctcattcctaattcaaatgtccatttatattctcatcaagtttaccaaaaattgaagnnnnnnnncctaacaataaatacttaaatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
15313954 |
caaatcctatttctcattcctaattcaaatgtccatttatattctcatcaagtttaccaaaaaatgaagaaaaaaaacctaacaataaatacttaaatta |
15313855 |
T |
|
| Q |
216 |
aatctgacaataaaccctgaaatctaaaacatacnnnnnnnttatggtgtttgaaaaaagataataaatttctgatgaaaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15313854 |
aatctgacaataaaccctgaaatctaaaacatacaaaaaaatcatggggtttgaaaaaagataataaatttctgatgaaaa |
15313774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University