View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_61 (Length: 302)
Name: NF20321_low_61
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_61 |
 | |
|
| [»] scaffold0176 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0176 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 31732 - 31853
Alignment:
| Q |
19 |
actagtatgtgttattttgagctaagttttaatcatatttcaattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31732 |
actagtatgtgttattttgagctaagttttaatcatatttcaattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttt |
31831 |
T |
|
| Q |
119 |
taaacacaaacgacagaaagta |
140 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31832 |
taaacacaaacgacagaaagta |
31853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 31919 - 32006
Alignment:
| Q |
205 |
gtaaaagatagagatgattatttaatctannnnnnnatcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31919 |
gtaaaagatagagatgattatttaatctatttttc-atcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
32006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 34164911 - 34165032
Alignment:
| Q |
19 |
actagtatgtgttattttgagctaagttttaatcatatttcaattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34164911 |
actagtatgtgttattttgagctaagttttaatcatatttcaattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttt |
34165010 |
T |
|
| Q |
119 |
taaacacaaacgacagaaagta |
140 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34165011 |
taaacacaaacgacagaaagta |
34165032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 34171408 - 34171529
Alignment:
| Q |
19 |
actagtatgtgttattttgagctaagttttaatcatatttcaattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34171408 |
actagtatgtgttattttgagctaagttttaatcatatttcaattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttt |
34171507 |
T |
|
| Q |
119 |
taaacacaaacgacagaaagta |
140 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34171508 |
taaacacaaacgacagaaagta |
34171529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 34215006 - 34215127
Alignment:
| Q |
19 |
actagtatgtgttattttgagctaagttttaatcatatttcaattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34215006 |
actagtatgtgttattttgagctaagttttaatcatatttcaattttatactttttctgcagtgatattgttagcaaggttgcatatgcaccactctttt |
34215105 |
T |
|
| Q |
119 |
taaacacaaacgacagaaagta |
140 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34215106 |
taaacacaaacgacagaaagta |
34215127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 34165098 - 34165185
Alignment:
| Q |
205 |
gtaaaagatagagatgattatttaatctannnnnnnatcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34165098 |
gtaaaagatagagatgattatttaatctatttttc-atcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
34165185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 34171595 - 34171682
Alignment:
| Q |
205 |
gtaaaagatagagatgattatttaatctannnnnnnatcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34171595 |
gtaaaagatagagatgattatttaatctatttttc-atcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
34171682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 34215192 - 34215279
Alignment:
| Q |
205 |
gtaaaagatagagatgattatttaatctannnnnnnatcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
293 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34215192 |
gtaaaagataaagatgattatttaatctattttcc-atcaaaataggtggataccagatacaattgtttttaactcttatcagaattat |
34215279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 38725304 - 38725269
Alignment:
| Q |
258 |
ccagatgcaattgtttttaactcttatcagaattat |
293 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38725304 |
ccagacgcaattgtttttaactcttatcagaattat |
38725269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University