View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_62 (Length: 302)
Name: NF20321_low_62
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 1977927 - 1977789
Alignment:
| Q |
8 |
tatcaaaggacccatgaaatcactcaacagggttgtatcaagacctttgaaagtgcttgtaaagtttccatggaaaatcatatccaatcttccaggaggt |
107 |
Q |
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| T |
1977927 |
tatcaaaggacccatgaaatcactcaacagggttgtatcaagacctttgaaagtgcttgtaaagtttccatggaaaatcatatccaatcttccaggaggt |
1977828 |
T |
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| Q |
108 |
aaacttctaaaacaacctgttgaatctttatttttctct |
146 |
Q |
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| T |
1977827 |
aaacttctaaaacaacctgttgaatctttatttttctct |
1977789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 1948482 - 1948620
Alignment:
| Q |
11 |
caaaggacccatgaaatcactcaacagggtt---gtatcaagacctttgaaagtgcttgtaaagtttccatggaaaatcatatccaatcttccaggaggt |
107 |
Q |
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| T |
1948482 |
caaaggacccatgaaatcactcaaaagggttcttgtatcaagacctttgaaagtgcttgtaaagtttccatggaaaatcataagcaatcttccaggaggt |
1948581 |
T |
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| Q |
108 |
aaacttctaaaacaacctgttgaatctttatttttctct |
146 |
Q |
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| T |
1948582 |
aaacttctaaaacaacctattgaatctttatttttctct |
1948620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 185 - 287
Target Start/End: Complemental strand, 1977750 - 1977648
Alignment:
| Q |
185 |
ttctagcactgatcttgttaacaagccacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctaca |
284 |
Q |
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| T |
1977750 |
ttctagcactgatcttgttaacaagccacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctaca |
1977651 |
T |
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| Q |
285 |
aat |
287 |
Q |
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||| |
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| T |
1977650 |
aat |
1977648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 1984645 - 1984570
Alignment:
| Q |
211 |
cacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaa |
286 |
Q |
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| T |
1984645 |
cacccttggtggaggaaatcgctattccttctgttgaacaacttgtgactgcaggggttaatttcttacctgcaaa |
1984570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 1948668 - 1948716
Alignment:
| Q |
197 |
tcttgttaacaagccacctttgatggatgaaatcgctattccttctgtt |
245 |
Q |
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| T |
1948668 |
tcttattaacaagccacctttgattgaagaaatcactattccttctgtt |
1948716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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