View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_65 (Length: 291)
Name: NF20321_low_65
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_65 |
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| [»] scaffold0444 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 44440022 - 44439815
Alignment:
| Q |
18 |
agaactgacctctggattgtttaagccaatatccaagccattttctctcgatgaaactatggcattttttcaatatccttagcctatcaacttcgcagag |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44440022 |
agaaccgacctctggattgtttaagccaatatccaagccattttctctcgatgaaactatggcattttttcaatatccttagcctatcaacttcgcagag |
44439923 |
T |
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| Q |
118 |
ggtttcttatcaaacttatttcccatccctgaagaagtaaaggatatactggtgcgtttatagatagtgatactgtgagagtcagtatatgtctgttatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44439922 |
ggtttcttatcaaacttatttcccatccctgaagaagtaaaggatatactggtgcgtttatagatagtgatactgtgagagtcagtatatgtctgttatg |
44439823 |
T |
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| Q |
218 |
atacattc |
225 |
Q |
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|||||||| |
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| T |
44439822 |
atacattc |
44439815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 44429806 - 44429629
Alignment:
| Q |
18 |
agaactgacctctggattgtttaagccaatatccaagccattttctctcgatgaaactatggcattttttcaatatccttagcctatcaacttcgcagag |
117 |
Q |
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||||||||| || ||||| || | ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
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| T |
44429806 |
agaactgacttccggattattgaggccaatatctaagctgttttctctcgatgaaactatggcattttttcaataccctgagcctatcaactttgcagag |
44429707 |
T |
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| Q |
118 |
ggtttcttatcaaacttatttcccatccctgaagaagtaaaggatatactggtgcgtttatagatagtgatactgtga |
195 |
Q |
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|||||| |||||||||| |||||||| ||||||||||||||||| || | | ||| |||| ||||||||||||||||| |
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| T |
44429706 |
ggtttcctatcaaacttctttcccattcctgaagaagtaaaggaaattccgatgcatttaaagatagtgatactgtga |
44429629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 44439793 - 44439762
Alignment:
| Q |
248 |
tctctactatagtctcatttttcttcgcccta |
279 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44439793 |
tctctactatagtctcatttttcttcgcccta |
44439762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 4835 - 4629
Alignment:
| Q |
18 |
agaactgacctctggattgtttaagccaatatccaagccattttctctcgatgaaactatggcattttttcaatatccttagcctatcaacttcgcagag |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4835 |
agaaccgacctctggattgtttaagccaatatccaagccattttctctcgatgaaactatggcattttttcaatatccttagcctatcaacttcgcagag |
4736 |
T |
|
| Q |
118 |
ggtttcttatcaaacttatttcccatccctgaagaagtaaaggatatactggtgcgtttatagatagtgatactgtgagagtcagtatatgtctgttatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4735 |
ggtttcttatcaaacttatttcccatccctgaagaagtaaaggatatactggtgcgtttatagatagtgatactgtgagagtcagtatatgtctgttatg |
4636 |
T |
|
| Q |
218 |
atacatt |
224 |
Q |
| |
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||||||| |
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|
| T |
4635 |
atacatt |
4629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 4605 - 4574
Alignment:
| Q |
248 |
tctctactatagtctcatttttcttcgcccta |
279 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4605 |
tctctactatagtctcatttttcttcgcccta |
4574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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