View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_67 (Length: 290)
Name: NF20321_low_67
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_67 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 11550680 - 11550938
Alignment:
| Q |
13 |
cagatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11550680 |
cagatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
11550779 |
T |
|
| Q |
113 |
ctaatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagttgacaacaagactatatgaaacatgaacttttaggatatgaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11550780 |
ctaatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagctgacaacaagactatatgaaacatgaacttttaggatatgaa |
11550879 |
T |
|
| Q |
213 |
tattggtactttgttctgcttttactctatttattttgttggtctggaagagtatgcaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11550880 |
tattggtactttgttctgcttttactctatttattttgttggtctggaagagtatgcaa |
11550938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 11562559 - 11562300
Alignment:
| Q |
13 |
cagatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
112 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11562559 |
cagacgcaggttgttaccgtgaagccacttgacagaaatggatttcaacagaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
11562460 |
T |
|
| Q |
113 |
ctaatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagttgac-aacaagactatatgaaacatgaacttttaggatatga |
211 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11562459 |
ctaatcttttcaacttagtagaactaattaaagatggcaaggtttgtctggtcacagttgacaaacaagaccatatgaaacatgaacttttaggatatgg |
11562360 |
T |
|
| Q |
212 |
atattggtactttgttctgcttttactctatttattttgttggtctggaagagtatgcaa |
271 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| || || ||||||||| ||||||| |
|
|
| T |
11562359 |
atgttggtactttgttctgcttttactctatttattatggtgttctggaagaatatgcaa |
11562300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 11545990 - 11546180
Alignment:
| Q |
13 |
cagatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
112 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11545990 |
cagacgcaggttgttacggtgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgcaccacc |
11546089 |
T |
|
| Q |
113 |
ctaatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagttgacaacaagactatatgaaacatgaactttta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
11546090 |
ttaatcttttcaacttagtagaattaattaaagatggcaaggtttgtccggtcacagttgacaacaagaccatatgaattatgaactttta |
11546180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 1188264 - 1188202
Alignment:
| Q |
191 |
acatgaacttttaggatatgaatattggtactttgttctgcttttactctatttattttgttg |
253 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
1188264 |
acatgaacttttaggatatcaaatttggtactttgttctccttttacttgatttattgtgttg |
1188202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 27472137 - 27472189
Alignment:
| Q |
186 |
atgaaacatgaacttttaggatatgaatattggtactttgttctgcttttact |
238 |
Q |
| |
|
||||||||||| | ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
27472137 |
atgaaacatgatttgttaggatattgatgttggtactttgttctgcttttact |
27472189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University