View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_low_72 (Length: 282)

Name: NF20321_low_72
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_low_72
NF20321_low_72
[»] chr7 (3 HSPs)
chr7 (13-136)||(9569014-9569138)
chr7 (225-282)||(9568817-9568874)
chr7 (31-108)||(36066327-36066404)
[»] chr8 (2 HSPs)
chr8 (56-119)||(43820403-43820466)
chr8 (31-103)||(6144755-6144827)
[»] chr3 (2 HSPs)
chr3 (56-119)||(1604518-1604581)
chr3 (33-119)||(10505722-10505807)
[»] chr1 (3 HSPs)
chr1 (56-119)||(11016467-11016530)
chr1 (231-282)||(11016246-11016298)
chr1 (231-282)||(36683470-36683522)
[»] chr6 (1 HSPs)
chr6 (231-275)||(21060155-21060200)
[»] chr4 (3 HSPs)
chr4 (31-104)||(26841764-26841837)
chr4 (231-263)||(6025414-6025446)
chr4 (231-282)||(42476961-42477013)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 9569138 - 9569014
Alignment:
Q  13 aatatctgaatatttttcgg-tgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaa 111  Q
    ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9569138 aatatctaaatatttttcgggtgggccaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcaaa 9569039  T
Q  112 aaattaaatagcataattggaagaa 136  Q
    |||||||||||||||||||||||||    
T  9569038 aaattaaatagcataattggaagaa 9569014  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 9568874 - 9568817
Alignment:
Q  225 ttagacaaatgaaatatcaatcatttgataagatccagagtatatttgttcataaagt 282  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9568874 ttagacaaatgaaatatcaatcatttgataagatccagaatatatttgttcataaagt 9568817  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 36066327 - 36066404
Alignment:
Q  31 ggtgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatc 108  Q
    ||||||| |||||||||||  ||  ||||||||||||||||| |||||||||  | |||||| |||||||||| ||||    
T  36066327 ggtgggccaccaaaataaactatgatatataaaacaaaatttgtgttgtagtgtgcattaaacataaagttgaaaatc 36066404  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 43820466 - 43820403
Alignment:
Q  56 tatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaaaaattaaa 119  Q
    |||||||||||||||||| ||||||||  | ||||||||||||||| | |||| ||||||||||    
T  43820466 tatataaaacaaaatttacgttgtagtgtgcattaaatataaagttaaaaatcaaaaaattaaa 43820403  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 6144827 - 6144755
Alignment:
Q  31 ggtgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttga 103  Q
    ||||||| |||||||| ||  ||  ||||||||| |||||||||||||||||  || ||||||||||||||||    
T  6144827 ggtgggccaccaaaatgaactatgatatataaaataaaatttatgttgtagtgtgtgttaaatataaagttga 6144755  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 1604581 - 1604518
Alignment:
Q  56 tatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaaaaattaaa 119  Q
    |||||||||||||||| ||||||||||  | |||||| |||||||||| |||| ||||||||||    
T  1604581 tatataaaacaaaattcatgttgtagtgtgcattaaacataaagttgaaaatcaaaaaattaaa 1604518  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 10505722 - 10505807
Alignment:
Q  33 tgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaaaaattaaa 119  Q
    |||||||||||||| ||  ||| |||| ||||||||||||||||| ||||  | |||||| |||||||||| |||  ||||||||||    
T  10505722 tgggctaccaaaatgaactataatataaaaaacaaaatttatgtt-tagtgtgcattaaacataaagttgaaaattaaaaaattaaa 10505807  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 11016530 - 11016467
Alignment:
Q  56 tatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaaaaattaaa 119  Q
    ||||||||||||| |||||||||||||  | |||||| |||||||||| |||| ||||||||||    
T  11016530 tatataaaacaaattttatgttgtagtgtgcattaaacataaagttgaaaatcaaaaaattaaa 11016467  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 11016298 - 11016246
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatcc-agagtatatttgttcataaagt 282  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||| ||||||    
T  11016298 aaatgaaatatcaatcatttgatgagatccaaaagtatatttgttcttaaagt 11016246  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 36683470 - 36683522
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatcc-agagtatatttgttcataaagt 282  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||| ||||||    
T  36683470 aaatgaaatatcaatcatttgatgagatccaaaagtatatttgttcttaaagt 36683522  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 21060200 - 21060155
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatcc-agagtatatttgttc 275  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||    
T  21060200 aaatgaaatatcaatcatttgatgagatccaaaagtatatttgttc 21060155  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 26841764 - 26841837
Alignment:
Q  31 ggtgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgag 104  Q
    ||||||| |||||| ||||  ||  |||||| ||||||||| ||||||| |||| ||||||| |||||||||||    
T  26841764 ggtgggccaccaaagtaaactatgatatatagaacaaaattaatgttgttgttaatattaaacataaagttgag 26841837  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 6025446 - 6025414
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatccaga 263  Q
    ||||||||||||||||||||||| |||||||||    
T  6025446 aaatgaaatatcaatcatttgatgagatccaga 6025414  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 42476961 - 42477013
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatccaga-gtatatttgttcataaagt 282  Q
    ||||||||||||||||||||||| ||||||| |  ||||||||||| ||||||    
T  42476961 aaatgaaatatcaatcatttgatgagatccaaatatatatttgttcttaaagt 42477013  T

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