View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_low_79 (Length: 275)

Name: NF20321_low_79
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_low_79
NF20321_low_79
[»] chr8 (16 HSPs)
chr8 (15-260)||(36188578-36188823)
chr8 (15-186)||(36210011-36210182)
chr8 (15-186)||(36213353-36213524)
chr8 (15-186)||(36196896-36197070)
chr8 (18-186)||(36201070-36201238)
chr8 (15-187)||(36199045-36199217)
chr8 (15-179)||(36207924-36208088)
chr8 (16-179)||(36184741-36184904)
chr8 (15-179)||(36202452-36202616)
chr8 (183-260)||(36210227-36210304)
chr8 (183-256)||(36213569-36213642)
chr8 (183-256)||(36201283-36201356)
chr8 (208-256)||(36214838-36214886)
chr8 (197-256)||(36197123-36197182)
chr8 (186-245)||(36202671-36202730)
chr8 (186-256)||(36183542-36183612)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 36188578 - 36188823
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  36188578 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcagg 36188677  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactattaaaattgagacctattgcatagccaattt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36188678 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactattaaaattgagacctattgcatagccaattt 36188777  T
Q  215 ctgtttgaatctttgtaatgtctggcttctttgttacagttgttgt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36188778 ctgtttgaatctttgtaatgtctggcttctttgttacagttgttgt 36188823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 36210011 - 36210182
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  36210011 agatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcagg 36210110  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210111 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 36210182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 36213353 - 36213524
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36213353 agatgtgagtaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaatcgagtctcccatgaagatcatacattacaatcagg 36213452  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 186  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| | |||||||||||    
T  36213453 actgtttgcagctctttcatcttagcacaaataagatgagctctttctgcagttgtcactgttttactatta 36213524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 36196896 - 36197070
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaagggg---acaccaatctcacctaaattgagtctcccatgaagatcatacattacaatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||| |||||||||| |||||||||||| |||||      
T  36196896 agatgtgagcaatatcttgcaaccattatgatcttcaccaaagggggggataccaatctcacctaaatcgagtctcccacgaagatcatacagtacaact 36196995  T
Q  112 aggactgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 186  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||  ||||||||| ||||||    
T  36196996 aggactgtttgcagctctttcatcttagcacacaaaagatgagctctttctgcagttgccattctttttctatta 36197070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 36201070 - 36201238
Alignment:
Q  18 tgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcaggact 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||  | ||| |||||||||||||||| |||||  ||||||    
T  36201070 tgtgagcaataccttgcaaccattatgatcttcaccaaaggggacaccaatctcccctaaatcaaatctaccatgaagatcatacagtacaactaggact 36201169  T
Q  118 gtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 186  Q
    ||||||||||| |||||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||    
T  36201170 gtttgcagctccttcatcttagcacaaataagatgagctctatctgcagttgtcattcttttactatta 36201238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 36199045 - 36199217
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||  ||||| |||| ||||||||||| |||||  |||    
T  36199045 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatcttacttaaatcaagtctaccataaagatcatacactacaactagg 36199144  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactattaa 187  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||| |||| ||| ||||||| ||||||    
T  36199145 actgtttgcagctctttcatcttagcacacagaagaagagctctttctgtagttgtcaatcttttattattaa 36199217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 36207924 - 36208088
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||| |||||  ||     
T  36207924 agatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcatacagtacaactagt 36208023  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattctttt 179  Q
    ||||||||||| |  || ||||||||||| ||||||  |||||||||||||||| ||||||||||    
T  36208024 actgtttgcagtttctttatcttagcacacagaagaagagctctttctgcagttgtcattctttt 36208088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 36184741 - 36184904
Alignment:
Q  16 gatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||| ||| |||||  || |    
T  36184741 gatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagta 36184840  T
Q  116 ctgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattctttt 179  Q
    |||||||||| || || |||||||| || ||||||  |||||||||||||||| ||||||||||    
T  36184841 ctgtttgcagttcctttatcttagcgcacagaagaagagctctttctgcagttgtcattctttt 36184904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 36202452 - 36202616
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| | |||||| |||| |||||  ||||| ||||| ||||||||||||||||  |||    
T  36202452 agatgtcagcaatatcttgcaacccttatgatcttcaccaaagggcataccaatttcacttaaatcaagtctaccatggagatcatacattacaactagg 36202551  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattctttt 179  Q
    |||||||||||||| |||||||||||||| || |||  |||||||||||||||| | ||||||||    
T  36202552 actgtttgcagctccttcatcttagcacacagtagaagagctctttctgcagttcttattctttt 36202616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 36210227 - 36210304
Alignment:
Q  183 attaaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttgttgt 260  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36210227 attaaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgt 36210304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 36213569 - 36213642
Alignment:
Q  183 attaaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    |||||||||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||||| |||||||    
T  36213569 attaaaattgagacctattgcatcaccaatttgtgtttgaatcattgtaatgtctggcttctttgtcacagttg 36213642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 36201283 - 36201356
Alignment:
Q  183 attaaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    |||||||||||||||||||||||  ||||| | ||||||||||||  |||||||||||||||| || |||||||    
T  36201283 attaaaattgagacctattgcatcaccaatctgtgtttgaatcttattaatgtctggcttcttggtcacagttg 36201356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 36214838 - 36214886
Alignment:
Q  208 ccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  36214838 ccaatttgtgtttgaatctttgtaatgtctggcttctttgtcacagttg 36214886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 36197123 - 36197182
Alignment:
Q  197 ctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    |||||||||  ||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  36197123 ctattgcatcaccaattagtgtttgaatctttgtaatgtctggcttctttgtcacagttg 36197182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 36202671 - 36202730
Alignment:
Q  186 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctt 245  Q
    |||||| |||| ||||||||  ||||||| ||||||||||| ||||||||||||||||||    
T  36202671 aaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 36202730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 36183542 - 36183612
Alignment:
Q  186 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    |||||||||||||||||||   ||||||| |||| |||||| |||||||||  |||||| ||| |||||||    
T  36183542 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttg 36183612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University