View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_81 (Length: 271)
Name: NF20321_low_81
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 225
Target Start/End: Complemental strand, 13029794 - 13029614
Alignment:
| Q |
49 |
gaaagatcataaattcttaatcttagtcacaccttattttaacaatatcttaatcttaataataata---catattaacctcacaaatgaaaatttgaat |
145 |
Q |
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| T |
13029794 |
gaaatatcataaattcttaatcttaatcacatcttattttaacaatatcttaatcttaataataataatacatattaacctcacaaatgaaaatttgaat |
13029695 |
T |
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| Q |
146 |
caaaaatcataactacacgaagtctcatcaaagnnnnnnntgacattaaaatatttgctctcaaa-aaccattaaaatatt |
225 |
Q |
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| T |
13029694 |
caaatatcataactacacgaagtctcatcaaagcaaaaaatgacattaaaatatttccactcaaaccaccattaaaatatt |
13029614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 13029625 - 13029554
Alignment:
| Q |
189 |
cattaaaatatttgctctcaaaa-accattaaaatattcattatggatgttctttgtgatcaatattattcg |
259 |
Q |
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| T |
13029625 |
cattaaaatatttccactcaaaccaccattaaaatattcattatggatgttctttgtgatcaatattattcg |
13029554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 13036324 - 13036215
Alignment:
| Q |
151 |
atcataactacacgaagtctcatcaaagnnnnnnntgacattaaaatatttgctctcaaaaac-cattaaaatattcattatggatgttctttgtgatca |
249 |
Q |
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|||||||||||||||||||||||||| | | |||||||||||||| ||| |||||| ||||||||||||||||||| |||||||| ||||| |
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| T |
13036324 |
atcataactacacgaagtctcatcaatgcaaaaaataacattaaaatatttcctcccaaaaaaacattaaaatattcattatgatagttctttgcgatca |
13036225 |
T |
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| Q |
250 |
atattattcg |
259 |
Q |
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|||||||||| |
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| T |
13036224 |
atattattcg |
13036215 |
T |
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