View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_86 (Length: 255)
Name: NF20321_low_86
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_86 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 21596822 - 21597042
Alignment:
| Q |
17 |
aatataagaaccaacaacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagcaacgca |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21596822 |
aatacaagaaccaacaacaacaaacaaacacgaaagaaccttccataaatcgctcttatcagttgattccctcgcataatatctcctcacaagcaaagca |
21596921 |
T |
|
| Q |
117 |
atagccataagcataaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttg |
216 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21596922 |
atcgccataagcataaaaatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttg |
21597021 |
T |
|
| Q |
217 |
tcaaaagtgtagcattaatag |
237 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21597022 |
tcaaaagtgtagcattaatag |
21597042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 11986993 - 11987206
Alignment:
| Q |
24 |
gaaccaacaacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagcaacgcaatagcca |
123 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11986993 |
gaaccaacaacaacaaacaaacacaaaagaaccttccataaatcactcttatccgttgcttccctcgcataatatctcctcacaagcaacgcaatagcca |
11987092 |
T |
|
| Q |
124 |
taagcataaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaag |
223 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11987093 |
taagcataaaaatgaaaagagtacttacagaaaaaacactagccagaacatccacactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaag |
11987192 |
T |
|
| Q |
224 |
tgtagcattaatag |
237 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11987193 |
tgtagcattaatag |
11987206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University