View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_low_89 (Length: 249)

Name: NF20321_low_89
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_low_89
NF20321_low_89
[»] chr6 (3 HSPs)
chr6 (1-240)||(5539842-5540081)
chr6 (1-203)||(5550739-5550936)
chr6 (47-116)||(34589807-34589876)
[»] chr3 (3 HSPs)
chr3 (53-127)||(15801456-15801529)
chr3 (43-128)||(15801699-15801784)
chr3 (47-130)||(26936779-26936860)
[»] chr1 (5 HSPs)
chr1 (43-128)||(38474803-38474888)
chr1 (70-128)||(4557003-4557061)
chr1 (45-102)||(12287503-12287560)
chr1 (43-108)||(5085820-5085885)
chr1 (43-111)||(46631260-46631328)
[»] chr2 (8 HSPs)
chr2 (43-127)||(41513781-41513865)
chr2 (43-116)||(8951368-8951441)
chr2 (47-124)||(2420000-2420077)
chr2 (43-127)||(33459162-33459246)
chr2 (43-123)||(42510694-42510774)
chr2 (68-123)||(38125395-38125450)
chr2 (128-183)||(45209490-45209545)
chr2 (94-127)||(41066389-41066422)
[»] chr8 (3 HSPs)
chr8 (48-127)||(13054302-13054381)
chr8 (66-116)||(11567573-11567623)
chr8 (50-105)||(37384734-37384789)
[»] chr5 (1 HSPs)
chr5 (43-111)||(35138563-35138631)
[»] chr4 (1 HSPs)
chr4 (43-127)||(20642336-20642420)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5540081 - 5539842
Alignment:
Q  1 ccctcaaatttgatattatatattttagtccttgaaattgtaaagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5540081 ccctcaaatttgatattatatattttagtccttgaaattgtaaagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaat 5539982  T
Q  101 ttcaatgactaaaatgtctatttactcgaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagtgcgccgaatttggcctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5539981 ttcaatgactaaaatgtctatttactcgaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagtgcgccgaatttggcctc 5539882  T
Q  201 ggttgcaaacagctttccaacgaatagtaccatgcctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5539881 ggttgcaaacagctttccaacgaatagtaccatgcctttg 5539842  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 5550739 - 5550936
Alignment:
Q  1 ccctcaaatttgatattatatattttagtccttgaaattgtaaagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaat 100  Q
    ||||||||||||||||| |  | |||||| ||||||||||||| ||||  |||||||| |||   |||||||||||||| ||||||| ||||||||||||    
T  5550739 ccctcaaatttgatattttgcactttagtacttgaaattgtaaggggatgaaattgcttttttgaaaatttgagggattaaattgacagacccttacaat 5550838  T
Q  101 ttcaatgactaaaatgtctatttactcgaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagtgcgccgaatttggcctc 200  Q
    ||||| |||||||||||||||||||||||||||||   ||||||||  |||||||||||||||||||||||||||||||||||||| || ||||||| ||    
T  5550839 ttcaaagactaaaatgtctatttactcgaaattaa---tatacact--cacatttcctttttctgtgtggttacagtccaagtgcgtcgcatttggcatc 5550933  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 34589876 - 34589807
Alignment:
Q  47 gactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatg 116  Q
    ||||||||||||| |||||||| |||||||| | |||| || ||||  |||||||| || ||||||||||    
T  34589876 gactaaattgctagttcacaaaattgagggactaaatttaccgaccaatacaattttaaggactaaaatg 34589807  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 15801529 - 15801456
Alignment:
Q  53 attgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 127  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||||||| |||||||||||    
T  15801529 attgctatttca-aaatttgagggattgaattgaccgaccgttacaatttgaaagactaaaatatctatttactc 15801456  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 15801699 - 15801784
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcg 128  Q
    ||||||| ||||||| || |  ||||||||||| |   ||| ||| |||| |||||||||||| ||||||||||||||||||||||    
T  15801699 aagggacaaaattgcgatcttgcaaatttgaggaacaaaatcgaccgacctttacaatttcaaggactaaaatgtctatttactcg 15801784  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 26936860 - 26936779
Alignment:
Q  47 gactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcgaa 130  Q
    |||| |||||||||||  ||||||| ||||| |||||  |  |||||||| ||| |||| ||||||||||| ||||||||||||    
T  26936860 gactgaattgctattttgcaaatttcagggactgaatcaa--gacccttaaaatgtcaaagactaaaatgtttatttactcgaa 26936779  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 38474803 - 38474888
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcg 128  Q
    ||||||||||||||||||||| ||||||| ||||| | |||||||   || |||||||||||| ||||||||||| ||||||||||    
T  38474803 aagggactaaattgctatttctcaaattttagggactaaattgaccacccgttacaatttcaaggactaaaatgtatatttactcg 38474888  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 4557061 - 4557003
Alignment:
Q  70 ttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcg 128  Q
    |||||||||| ||||||| |||||||||||||||||  |||| |||||| |||||||||    
T  4557061 ttgagggattaaattgaccgacccttacaatttcaagaactataatgtcaatttactcg 4557003  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 12287503 - 12287560
Alignment:
Q  45 gggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaattt 102  Q
    |||||||||||||||||| |||||||||||||||| |||| ||  || ||||||||||    
T  12287503 gggactaaattgctatttaacaaatttgagggattaaattaaccaactcttacaattt 12287560  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 5085885 - 5085820
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatga 108  Q
    |||||||||||||| ||||||| ||||| |||||| || ||||||  | || ||||||||||||||    
T  5085885 aagggactaaattgatatttcataaattcgagggactggattgacccaaccgtacaatttcaatga 5085820  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 46631328 - 46631260
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgacta 111  Q
    ||||||||||| | ||| ||| |||||||||  |||| ||||||| |||||||| |||||||| |||||    
T  46631328 aagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggacta 46631260  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 41513865 - 41513781
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 127  Q
    |||||||||| |||||||||  ||||||||| ||| | ||||| ||||||||| ||| |||| ||||||||||| ||||||||||    
T  41513865 aagggactaacttgctattttgcaaatttgaaggactaaattggctgacccttgcaaattcagtgactaaaatgcctatttactc 41513781  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 8951368 - 8951441
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatg 116  Q
    |||||||||| |||||||||||||||||||  ||| | ||||||| |||||||| |||||||| | ||||||||    
T  8951368 aagggactaatttgctatttcacaaatttggaggactaaattgacagacccttataatttcaaggtctaaaatg 8951441  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 2420000 - 2420077
Alignment:
Q  47 gactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattta 124  Q
    ||||||||||||||||||||||||||||| | ||| || |||||   |||||||||| | |||||||||  |||||||    
T  2420000 gactaaattgctatttcacaaatttgaggaactgagttaactgattgttacaatttctaggactaaaatacctattta 2420077  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 33459246 - 33459162
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 127  Q
    |||||||| ||||||||||||| |||| ||||| | | |||| || | |  |||||||||||| |||||||||||| ||||||||    
T  33459246 aagggactgaattgctatttcaaaaatatgaggaactaaattaaccgcctgttacaatttcaaggactaaaatgtcgatttactc 33459162  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 42510774 - 42510694
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattt 123  Q
    ||||||||||| | ||||||| || |||| | ||| | ||||||| |||| |||||||||||| |||||||||| ||||||    
T  42510774 aagggactaaactcctatttcgcagatttcaaggactaaattgaccgacctttacaatttcaaggactaaaatgcctattt 42510694  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 38125395 - 38125450
Alignment:
Q  68 atttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattt 123  Q
    |||| ||||||||||||||| |||| ||||||||||||  | ||||||||||||||    
T  38125395 atttcagggattgaattgaccgaccattacaatttcaaatattaaaatgtctattt 38125450  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 45209545 - 45209490
Alignment:
Q  128 gaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagt 183  Q
    |||||||| ||||||||||||||  |||||||||  |||||||||||||| |||||    
T  45209545 gaaattaatattatacactcacatgtttccttttcatgtgtggttacagttcaagt 45209490  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 41066422 - 41066389
Alignment:
Q  94 ttacaatttcaatgactaaaatgtctatttactc 127  Q
    ||||||||||||||||||||||| ||||||||||    
T  41066422 ttacaatttcaatgactaaaatgcctatttactc 41066389  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 13054381 - 13054302
Alignment:
Q  48 actaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 127  Q
    ||||||||||||||||||| |||||||||| | ||||||| | |||||  |||||||| || ||||||| ||||||||||    
T  13054381 actaaattgctatttcacatatttgagggactaaattgaccggcccttgaaatttcaacgaataaaatgcctatttactc 13054302  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 11567623 - 11567573
Alignment:
Q  66 aaatttgagggattgaattgactgacccttacaatttcaatgactaaaatg 116  Q
    |||||||||||| | ||||||| ||||||||||||||||| ||||||||||    
T  11567623 aaatttgagggactaaattgaccgacccttacaatttcaaggactaaaatg 11567573  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 37384789 - 37384734
Alignment:
Q  50 taaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaa 105  Q
    |||||||| ||||  ||||||||||||| | |||||||||||| ||||||||||||    
T  37384789 taaattgcaattttgcaaatttgagggactaaattgactgacctttacaatttcaa 37384734  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 35138563 - 35138631
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgacta 111  Q
    ||||||||||||||||||||| |||||||||   | | ||||||| || ||||| |||||||| |||||    
T  35138563 aagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggacta 35138631  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 20642420 - 20642336
Alignment:
Q  43 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 127  Q
    |||||||| ||||||||| |  |||||||||||||   |||||| ||||||||||||||| || || || |||||  ||||||||    
T  20642420 aagggactcaattgctatgttgcaaatttgagggacgaaattgattgacccttacaatttgaaggattagaatgttgatttactc 20642336  T

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