View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_9 (Length: 587)
Name: NF20321_low_9
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 284 - 531
Target Start/End: Original strand, 16396656 - 16396904
Alignment:
| Q |
284 |
ggtagttaactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatggatgttagaaaagaaatctccacttgttttaggtacatgta |
382 |
Q |
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| T |
16396656 |
ggtagttaactaccgttggggtgtttttagtcattttcacgtatttctaaaaaacaatggatgttagaaaagcaatctccacttgttttaggtacatgta |
16396755 |
T |
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| Q |
383 |
tttcaagagtggcagcattgctacatcgtggacatggtaagcaaactctactattgttctttcatgtaatattttcaaaacacagaaaactcggtgctca |
482 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16396756 |
tttcaagagtggcagcattgctacatcatggacatggtaagcaaactctactattgttctttcatgtaatattttcaaaacacagaaaactcggtgctca |
16396855 |
T |
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| Q |
483 |
ttcacatatatgaatattttctcaattctcatataccctttaacttgta |
531 |
Q |
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| T |
16396856 |
ttcacatatatgaatattttctcaattctcatataccctttaacttgta |
16396904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 16396412 - 16396669
Alignment:
| Q |
14 |
gcatagggtgggaaaaagtaatagtcttgattttatgttactcagtgtaataagagaggatctttatttctcacctattctataatgtaatggtagcagg |
113 |
Q |
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| T |
16396412 |
gcatagggtgggaaaa-gtaatagtcttgattttttgttactcagtgtaataagagaggatctttatttctcacctattctataatgtaatggtagcagg |
16396510 |
T |
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| Q |
114 |
gtggnnnnnnnnn------------gtgttatatgggctttggccttttaattgtttcaaacgtggtacacttgtttgagtgttgttgttcgcacacgac |
201 |
Q |
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| T |
16396511 |
gtgatttttttttttttttttttttgtgttatatgaggtttggccttttaattgtttcaaattttgtacatttgtttgagtgttgttgttcgcacacaac |
16396610 |
T |
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| Q |
202 |
aagaattttctataaacatatggaaatgacaaaataaaactcaacggtagttaactacc |
260 |
Q |
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| T |
16396611 |
aagaattttctataaatatatggaaatgacaaaaaaaaactcagcggtagttaactacc |
16396669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 525 - 568
Target Start/End: Original strand, 16396923 - 16396966
Alignment:
| Q |
525 |
acttgtaggtaaatttctacagaaagacccttttggagttcaac |
568 |
Q |
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| T |
16396923 |
acttgtaggtaaatttctacagaaagacccttttggagttcaac |
16396966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 30351529 - 30351445
Alignment:
| Q |
265 |
gttttctagtta--agttaaaggtagttaactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatggatgt |
346 |
Q |
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| T |
30351529 |
gttttctagttataagttagaagtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaatagatgt |
30351445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 503
Target Start/End: Original strand, 16399624 - 16399670
Alignment:
| Q |
457 |
tcaaaacacagaaaactcggtgctcattcacatatatgaatattttc |
503 |
Q |
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| T |
16399624 |
tcaaaacaccgaaaactcggtactcatttacatatatgtatattttc |
16399670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 14312861 - 14312900
Alignment:
| Q |
216 |
aacatatggaaatgacaaaataaaactcaacggtagttaac |
256 |
Q |
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| T |
14312861 |
aacatatggaaatgaccaaa-aaaactcaacggtagttaac |
14312900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 5979790 - 5979854
Alignment:
| Q |
284 |
ggtagttaactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatggatgtt |
347 |
Q |
| |
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| T |
5979790 |
ggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgtt |
5979854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 4873155 - 4873041
Alignment:
| Q |
247 |
ggtagttaactaccatcagttttctagt--taagttaaaggtagttaactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatgga |
343 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| | ||||||||||||||| || |||||||| || |||||| |||||| ||| ||| |||||| |
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| T |
4873155 |
ggtagttaactaccatcagttttctagttataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatgga |
4873056 |
T |
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| Q |
344 |
tgttagaaaagaaat |
358 |
Q |
| |
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|| | ||||||||| |
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| T |
4873055 |
agtcaaaaaagaaat |
4873041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 13793742 - 13793680
Alignment:
| Q |
285 |
gtagttaactaccgttggggtgtttttagtctttc-cacgtgtttctaggaaacaatggatgt |
346 |
Q |
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||||||||||||||||||||||||||| ||| ||| || |||||||| |||||||||||||| |
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| T |
13793742 |
gtagttaactaccgttggggtgtttttggtcattctcatatgtttctaagaaacaatggatgt |
13793680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 9040959 - 9040920
Alignment:
| Q |
237 |
aaaactcaacggtagttaactaccatcagttttctagtta |
276 |
Q |
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| T |
9040959 |
aaaactcagcggtagttaactatcatcagttttctagtta |
9040920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 14613606 - 14613541
Alignment:
| Q |
290 |
taactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatggatgttagaaaag |
354 |
Q |
| |
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| T |
14613606 |
taactaccgttggagtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaag |
14613541 |
T |
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