View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_94 (Length: 237)
Name: NF20321_low_94
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_94 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5540101 - 5540321
Alignment:
| Q |
1 |
ttagaagaaaatcatatatcaaaagtagtgaaatcttactctatacaggttcctgattgagctgagttgccctggcagccgcatgaacatgttgggcagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5540101 |
ttagaagaaaatcatatatcaaaagtagtgaaatcttactctatacaggttcctgattgagctgagttgccctggcagccgcatgaacatgttgggcagg |
5540200 |
T |
|
| Q |
101 |
gtacaatagtatcattatagaatgatgagagagcgacacaacaagttggagttttcggagctagaaattgtgaatatgtgcatctcacattccatgtcac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5540201 |
gtacaatagtatcattatagaatgatgagagagcgacacaacaagttggagttttcggagctagaaattgtgaatatgtgcatctcacattccatgtcac |
5540300 |
T |
|
| Q |
201 |
tgaaaaaatcagagtaatgtt |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
5540301 |
tgaaaaaatcagagtaatgtt |
5540321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5550719 - 5550498
Alignment:
| Q |
1 |
ttagaagaaaatcatatatcaaaagtagtgaaatcttactctatacaggttcctgattgagctgagttgccctggcagccgcatgaacatgttgggcagg |
100 |
Q |
| |
|
||||||| |||| ||||||||| |||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||||| |
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| T |
5550719 |
ttagaaggaaattatatatcaagagtagtgatatcttactctatacagcttcctgattgaggtgagttgccttggcagccgcatgaacatgtcgggcagg |
5550620 |
T |
|
| Q |
101 |
gtacaatagtatcattatagaatgatgagagagcgacacaacaagttggagttttcggagctagaaattgtgaatatgtgcatctcacattccatgtcac |
200 |
Q |
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|||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
5550619 |
gtacaatagtatcattgtagaatgatgagagggcaacacaacaagttggagtttgttgagctaaaaattgtgaatatgtgcatgtcacattccatgtcac |
5550520 |
T |
|
| Q |
201 |
tg-aaaaaatcagagtaatgtt |
221 |
Q |
| |
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|| ||| ||||||||| ||||| |
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| T |
5550519 |
tgcaaacaatcagagttatgtt |
5550498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 5007973 - 5007820
Alignment:
| Q |
49 |
gttcctgattgagctgagttgccctggcagccgcatgaacatgttgggcagggtacaatagtatcattatagaatgatgagagagcgacacaacaagttg |
148 |
Q |
| |
|
||||| || |||| |||||| | ||||||||| |||| ||||||||||||||||||||| ||||| |||||||| |||||||| | |||||| ||||| | |
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| T |
5007973 |
gttccggactgagatgagttactctggcagccacatgcacatgttgggcagggtacaatggtatcgttatagaaagatgagagggagacacagcaagtcg |
5007874 |
T |
|
| Q |
149 |
gagttttcggagctagaaattgtgaatatgtgcatctcacattccatgtcactg |
202 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
5007873 |
gagttttctgagccagaaattgtgaatatgtgcatgtaacattccatgtcactg |
5007820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 45209679 - 45209880
Alignment:
| Q |
21 |
aaaagtagtgaaatcttactctatacaggttcctgattgagctgagttgccctggcagccgcatgaacatgttgggcagggtacaatagtatcattatag |
120 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||| ||||||| | |||||| |||||||||| | ||||||||||||||| | || ||||| |
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| T |
45209679 |
aaaagtaatgaaatcttactctatacaacttcctgattgaaatgagttgtcttggcaggcgcatgaacagttcgggcagggtacaatattctcgctatag |
45209778 |
T |
|
| Q |
121 |
aatgatgagagagcgacacaacaagttggagttttcggagctagaaattgtgaatatgtgcatctcacattccatgtcactg-aaaaaatcagagtaatg |
219 |
Q |
| |
|
|| |||||||| | || || ||| |||||| |||| || ||||||||||||||||||||||| |||| ||||||||||||| || |||||||||||||| |
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|
| T |
45209779 |
aaagatgagagggaaacgcagcaatttggaggtttctgaactagaaattgtgaatatgtgcatgtcaccttccatgtcactgcaacaaatcagagtaatg |
45209878 |
T |
|
| Q |
220 |
tt |
221 |
Q |
| |
|
|| |
|
|
| T |
45209879 |
tt |
45209880 |
T |
|
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