View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_97 (Length: 233)
Name: NF20321_low_97
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_97 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 664022 - 664227
Alignment:
| Q |
1 |
caacaatgtcagctcaactggacagtgcagacccataaaaccaaatacaataagttctaaaacaaaacacattgtcatcttacacgagaattcgaaaagg |
100 |
Q |
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| T |
664022 |
caacaatgtcagctcaactggacagtgcagacccataaaaccaaa--------gttctaaaacaaaacacattgtcatcttacacgagaattcgaaaagg |
664113 |
T |
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| Q |
101 |
ctaatcccttatgtatctgtatggccagnnnnnnntggcgggacacgagggtatgtttttgttaagaagccaaatatattaaaaggatcaaatctaagca |
200 |
Q |
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| T |
664114 |
ctaatcccttatgtatctgtatggccagaaaaaaatggcgggacacgagggtatgtttttgttaagaagccaaatatattaaaaggatcaaatctaagca |
664213 |
T |
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| Q |
201 |
caaggtgtgcaaag |
214 |
Q |
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| T |
664214 |
caaggtgtgcaaag |
664227 |
T |
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Back To:
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 6004498 - 6004576
Alignment:
| Q |
28 |
cagacccataaaaccaaatacaataagttctaaaacaaaacacattgtcatcttacacgagaattcgaaaaggctaatc |
106 |
Q |
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|||||| |||||| |||| | || |||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
6004498 |
cagaccaataaaatcaaacaaaaaaagttctaaaacaaaacacattgtcatcttgaacgagaactcgaaaaggataatc |
6004576 |
T |
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