View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_99 (Length: 223)
Name: NF20321_low_99
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_99 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 17008079 - 17007875
Alignment:
| Q |
1 |
aaaaaggattatagaaaagatttgaatgtggtggagaagttgattagagaggtgacggatagacaatgtggaatttctgaaaagaataatgagaatagtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17008079 |
aaaaaggattatagaaaagatttgaatatggtggagaagttgattagagaggtgatggatagacaatgtggaatttctgagaagaataatgagaatagtc |
17007980 |
T |
|
| Q |
101 |
catcttccataagtactgatgagttggaacatgcagatcttgctagtgtttcctctagtacctatgtgaatggagtatcagatgcgctgaaagtgaagag |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
17007979 |
catcttccacaagtactgatgagttggaacatgcagatcatgctagtgtttcctctagtacctatgtgaatggagtatcagaggcgctgaaagcgaagag |
17007880 |
T |
|
| Q |
201 |
tgttg |
205 |
Q |
| |
|
||||| |
|
|
| T |
17007879 |
tgttg |
17007875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 16968600 - 16968535
Alignment:
| Q |
90 |
tgagaatagtccatcttccataagtactgatgagttggaacatgcagatcttgctagtgtttcctc |
155 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
16968600 |
tgagaatagtccatcttccacaaatattgatgagttggagcatgaagatcatgctagtgtttcctc |
16968535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 16977930 - 16977863
Alignment:
| Q |
12 |
tagaaaagatttgaatgtggtggagaagttgattagagaggtgacggatagacaatgtggaatttctg |
79 |
Q |
| |
|
||||||| | ||||||||||| ||| | ||| |||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
16977930 |
tagaaaatacttgaatgtggtcgaggatttggttagagaggtgatggataaacaaagtggaatttctg |
16977863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 35263166 - 35263233
Alignment:
| Q |
88 |
aatgagaatagtccatcttccataagtactgatgagttggaacatgcagatcttgctagtgtttcctc |
155 |
Q |
| |
|
||||||||| ||||||||||| || || |||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
35263166 |
aatgagaatgttccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctc |
35263233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University