View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20322_high_1 (Length: 735)
Name: NF20322_high_1
Description: NF20322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20322_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 221 - 718
Target Start/End: Original strand, 22722332 - 22722829
Alignment:
| Q |
221 |
atctaagaagctaacggattaagagaaggatagaagcataattaattgcaaagtttccacagtaaatgatagctttaagttattacagatccttagatca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22722332 |
atctaagaagctaacggattaagagaaggatagaagcataattaattgcaaagtttccacagtaaatgatagctttaagttattacagatccttagatca |
22722431 |
T |
|
| Q |
321 |
atctgatgggattcaagagaatatagctttcttagtaacaaatatatcatgagtctatttggattgtcttatttgagagactatatctgctctaccgttt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22722432 |
atctgatgggattcaagagaatatagctttcttagtaacaaatatatcatgagtctatttggattgtcttatttgagagactatatctgctctaccgttt |
22722531 |
T |
|
| Q |
421 |
gaaaaacaatatatctgatctttgattaatcaatatttacaaaatgtatagatgtattagtttacctggttgtgtgtgnnnnnnnnnatcaataggaaaa |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22722532 |
gaaaaacaatatatctgatctttgattaatcaatatttacaaaatgtatagatgtattagtttacctggttgtgtgtgtttttttttatcaataggaaaa |
22722631 |
T |
|
| Q |
521 |
taaaaacaaggaaaaaggactaagctatctgctacctaaacaccgcagatgcaagataatatccaattgagggagatgagcaatccacagtttcaaaagg |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22722632 |
taaaaacaaggaaaaaggactaagctatctgctacctaaacaccgcagatgcaagataatatccaattgagggagatgagcaatccacagtttcaaaagg |
22722731 |
T |
|
| Q |
621 |
ttgatattattagaaacatcaaccttaatcaaccaataaatacattctacccttctctcaaggtatgattaaagaagaccacccaaaaatgagaagtg |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22722732 |
ttgatattattagaaacatcaaccttaatcaaccaataaatacattctacccttctctcaaggtatgattaaagaagaccacccaaaaatgagaagtg |
22722829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 22722123 - 22722272
Alignment:
| Q |
12 |
agcagagaggaaagttgacataaaatcaatgaaagatggacgttgatcctctttccatgcatttctcatcaaacagactccatttagacctacaagtgga |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22722123 |
agcagagaggaaagttgacataaaatcaatgaaagatggacgttgatcctctttccatgcatttctcatcaaacagactccatttatacctacaagtgga |
22722222 |
T |
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| Q |
112 |
gataagaatgcannnnnnnaaccaataaaattttacacaataaagtagga |
161 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22722223 |
gataagaatgcatttttttaaccaataaaattttacacaataaagtagga |
22722272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 2356193 - 2356277
Alignment:
| Q |
12 |
agcagagaggaaagttgacataaaatcaatgaaagatggacgttgatcctctttccatgcatttctcatcaaacagactccattt |
96 |
Q |
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||||||||||||||| || |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2356193 |
agcagagaggaaagtggagataaaatcaatgaaggaaggatgttgatcctctttccatgcatttctcatcaaacagattccattt |
2356277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 23747575 - 23747522
Alignment:
| Q |
12 |
agcagagaggaaagttgacataaaatcaatgaaagatggacgttgatcctcttt |
65 |
Q |
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||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
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|
| T |
23747575 |
agcagagaggaaagtggagataaaatcaatgaaggatggacgttgatcctcttt |
23747522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 23747488 - 23747446
Alignment:
| Q |
221 |
atctaagaagctaacggattaagagaaggatagaagcataatt |
263 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
23747488 |
atctaagaagctaatggattaagagaaagatagaagcataatt |
23747446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 18538909 - 18538802
Alignment:
| Q |
221 |
atctaagaagctaacggattaagagaaggatagaagc-ataat--taattgcaaagtttccacagtaaatgatagctttaagttattacagatccttaga |
317 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||| | || ||||||||||| || |||||||||||||||||||||||||||||| ||||||| | |
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| T |
18538909 |
atctaagaagctaatggattaagagaagcgtagaagatagaaccataattgcaaagcttgcacagtaaatgatagctttaagttattacatatccttata |
18538810 |
T |
|
| Q |
318 |
tcaatctg |
325 |
Q |
| |
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| |||||| |
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|
| T |
18538809 |
ttaatctg |
18538802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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