View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20322_high_12 (Length: 292)
Name: NF20322_high_12
Description: NF20322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20322_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 16299543 - 16299816
Alignment:
| Q |
1 |
agcccttgcattctcccaatcatcactcgttggtggaccatcaggtccaaagtattccctataactagaatcttcgtcttcaagcttttcaaaagctact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16299543 |
agcccttgcattctcccaatcatcactcgttggtggaccatcaggtccaaagtattccctataactagaatcttcgtcttcaagcttttcaaaagctact |
16299642 |
T |
|
| Q |
101 |
tgaaactttacagcactactcagcataaacaatgttgcgttccaacgagttgaaacatcaagagacactagctttttagatgttattctagcaaattcga |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
16299643 |
tgaaactttatagcactactcagcataaacaatgttgcgttccaacgagttgaaacatcaagagacactagttttttagatgttattccagcaaattcga |
16299742 |
T |
|
| Q |
201 |
tacactctttgaacttggcagccctttgaggagaagattttacaaacctaacagcatctctgacatgagtaatg |
274 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16299743 |
tacactctttgaacttggcatccctttgaggagaagattttacaaacctaacagcatctctgacacgagtaatg |
16299816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 22897040 - 22897313
Alignment:
| Q |
1 |
agcccttgcattctcccaatcatcactcgttggtggaccatcaggtccaaagtattccctataactagaatcttcgtcttcaagcttttcaaaagctact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22897040 |
agcccttgcattctcccaatcatcactcgttggtggaccaacaggtccaaagtattccctataactagaatcttcgtcttcaagcttttcaaaagctact |
22897139 |
T |
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| Q |
101 |
tgaaactttacagcactactcagcataaacaatgttgcgttccaacgagttgaaacatcaagagacactagctttttagatgttattctagcaaattcga |
200 |
Q |
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| T |
22897140 |
tgaaactttatagcactactcagcataaacaatgttgcgttccaacgagttgaaacatcaagagacactagttttttagatgttattccagcaaattcga |
22897239 |
T |
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| Q |
201 |
tacactctttgaacttggcagccctttgaggagaagattttacaaacctaacagcatctctgacatgagtaatg |
274 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22897240 |
tacactctttgaacttggcaaccctttgaggagaagattttacaaacctaacagcatctctgacacgagtaatg |
22897313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 15977781 - 15978028
Alignment:
| Q |
1 |
agcccttgcattctcccaatcatcactcgttggtggaccatcaggtccaaagtattccctataactagaatcttcgtcttcaagcttttc-aaaagctac |
99 |
Q |
| |
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|||||||||||||||||||| ||||||| | |||||| ||| |||||| |||||||||||||||||||||| || ||||||||||| |||| |||| |
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| T |
15977781 |
agcccttgcattctcccaattatcactcatcaacggaccaacagctccaaataattccctataactagaatcttcatcctcaagcttttcaaaaaactac |
15977880 |
T |
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| Q |
100 |
ttgaaactttacagcactactcagcataaacaatgttgcgttccaacgagttgaaacatcaagagacactagctttttagatgttattctagcaaattcg |
199 |
Q |
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|||||||||| ||||| || ||| | || |||||| |||||||||||| |||||||||||| |||| | ||||| ||| ||| ||||||||| |
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| T |
15977881 |
ttgaaacttttcagcaatatctagcttcaaatatgttgagttccaacgagtggaaacatcaagacacacaaatttttttaatg---ttccagcaaattca |
15977977 |
T |
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| Q |
200 |
atacactctttgaacttggcagccctttgaggagaagattttacaaaccta |
250 |
Q |
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| ||| ||||| |||||| ||| ||| |||||||||| ||||||||||||| |
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| T |
15977978 |
acacattctttaaacttgacagtcctatgaggagaagtttttacaaaccta |
15978028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 14428080 - 14427997
Alignment:
| Q |
173 |
tttttagatgttattctagcaaattcgatacactctttgaacttggcagccctttgaggagaagattttacaaacctaacagcatc |
258 |
Q |
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|||||| ||||||||| |||| ||| ||||| ||||| ||||||| || ||| |||||||||| ||||||||||||| ||||||| |
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| T |
14428080 |
tttttacatgttattccagcatatttgatac--tctttaaacttggaagtcctatgaggagaagtttttacaaacctatcagcatc |
14427997 |
T |
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