View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20322_high_3 (Length: 456)
Name: NF20322_high_3
Description: NF20322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20322_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 150 - 315
Target Start/End: Complemental strand, 34354417 - 34354238
Alignment:
| Q |
150 |
gttgagttattagaggagtttgaagataatttatattgagtttaaaagcaaccattattagagaaataatgcatcttcaccatttcacatatacaaacat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354417 |
gttgagttattagaggagtttgaagataatttatattgagtt-aaaagcaaccattattagagaaataatgcatcttcaccatttcacatatacaaacat |
34354319 |
T |
|
| Q |
250 |
ccacttttt---------------ctacttttgacatttccatcaaatgtgagactactcttgaaacaaacaatcttcctc |
315 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354318 |
ccactttttctacatccactttttctacttttgacatttccatcaaatgtgagactactcttgaaacaaacaatcttcctc |
34354238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 311 - 440
Target Start/End: Complemental strand, 34354198 - 34354069
Alignment:
| Q |
311 |
tcctcaaatggaagttttttcgttcatatgtacttaccctgtcgttgcttgctctcaacataacacacccgttgaacaccttgctcagaaagacttgtaa |
410 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354198 |
tcctcaaatagaagttttttcattcatatgtacttaccccgtcgttgcttgctctcaacataacacacccgttgaacaccttgctcagaaagacttgtaa |
34354099 |
T |
|
| Q |
411 |
tacaagaatcaatcaaaccatcgactctat |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34354098 |
tacaagaatcaatcaaaccatcgactctat |
34354069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 34354553 - 34354482
Alignment:
| Q |
12 |
ccaagaatatttatatacatcatgtgatnnnnnnnacccaccaacctattacatctattacttcactcttatt |
84 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354553 |
ccaagaatatttatatacatcatgtgatcccccc-acccaccaacctattacatctattacttcactcttatt |
34354482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University