View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20322_high_7 (Length: 309)
Name: NF20322_high_7
Description: NF20322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20322_high_7 |
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| [»] scaffold0245 (3 HSPs) |
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| [»] scaffold0229 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 1299773 - 1299473
Alignment:
| Q |
1 |
cgaaattgtatgtgcactaattttgttggtatacagaatatgaagtcaagtgcagttaccttggaaaaggcccttgaacttctatcaggtgaagatgcga |
100 |
Q |
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| T |
1299773 |
cgaaattgtatgtgcactaattttgttggtatacagaatatgaagtcaagtgcagttaccttggaaaaggcccttgaacttctatcaggtgaagatgcga |
1299674 |
T |
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| Q |
101 |
gaaatgttggtggaccacacaaacggtactctcgagttaaagatgttgaagctctctaagattttgacctggataattagcatgactacagagttttcac |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1299673 |
gaaatgttggtggaccgcacaaacggtactctcgagttaaagatgttgaagctctctaagattttgacctggataattagcatgactacagagttttcac |
1299574 |
T |
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| Q |
201 |
atgattaacaagttaacttttgcagtaagctactagctatgttcgacaattatgcaagagttacaactcccagtcccaaatgagtcaaggatgattcatc |
300 |
Q |
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| T |
1299573 |
atgattaacaagttaactttcgcagtaagctactagctatgttcgacaattatgcaagagttacaactcccagtcccaaatgagtcaaggatgattcatc |
1299474 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| T |
1299473 |
t |
1299473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 1276342 - 1276270
Alignment:
| Q |
141 |
agatgttgaagctctctaagattttgacctggat-aattagcatgactacagagttttcacatgattaacaag |
212 |
Q |
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| T |
1276342 |
agatgttgaagctttgtaagattttgacctggataaattagcatgagttcagagttttcatgtgattaacaag |
1276270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 1277663 - 1277605
Alignment:
| Q |
34 |
cagaatatgaagtcaagtgcagttaccttggaaaaggcccttgaacttctatcaggtga |
92 |
Q |
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| T |
1277663 |
cagagtatgaagccaagtgaaatcaccttcgaaaaggcccttgaacttttatcaggtga |
1277605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 1279225 - 1279163
Alignment:
| Q |
26 |
ttggtatacagaatatgaagtcaagtgcagttaccttggaaaaggcccttgaacttctatcag |
88 |
Q |
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| T |
1279225 |
ttggtatccagagtatgaagccaagtgaaatcaccttggaaaaggcccttgaatttttatcag |
1279163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 2019 - 1947
Alignment:
| Q |
141 |
agatgttgaagctctctaagattttgacctggat-aattagcatgactacagagttttcacatgattaacaag |
212 |
Q |
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| T |
2019 |
agatgttgaagctttgtaagattttgacctggataaattagcatgagttcagagttttcatgtgattaacaag |
1947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 3340 - 3282
Alignment:
| Q |
34 |
cagaatatgaagtcaagtgcagttaccttggaaaaggcccttgaacttctatcaggtga |
92 |
Q |
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| T |
3340 |
cagagtatgaagccaagtgaaatcaccttcgaaaaggcccttgaacttttatcaggtga |
3282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 4902 - 4840
Alignment:
| Q |
26 |
ttggtatacagaatatgaagtcaagtgcagttaccttggaaaaggcccttgaacttctatcag |
88 |
Q |
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||||||| |||| ||||||| |||||| | | ||||||||||||||||||||| || |||||| |
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| T |
4902 |
ttggtatccagagtatgaagccaagtgaaatcaccttggaaaaggcccttgaatttttatcag |
4840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 2350 - 2278
Alignment:
| Q |
141 |
agatgttgaagctctctaagattttgacctggat-aattagcatgactacagagttttcacatgattaacaag |
212 |
Q |
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| T |
2350 |
agatgttgaagctttgtaagattttgacctggataaattagcatgagttcagagttttcatgtgattaacaag |
2278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 3671 - 3613
Alignment:
| Q |
34 |
cagaatatgaagtcaagtgcagttaccttggaaaaggcccttgaacttctatcaggtga |
92 |
Q |
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| T |
3671 |
cagagtatgaagccaagtgaaatcaccttcgaaaaggcccttgaacttttatcaggtga |
3613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 5233 - 5171
Alignment:
| Q |
26 |
ttggtatacagaatatgaagtcaagtgcagttaccttggaaaaggcccttgaacttctatcag |
88 |
Q |
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||||||| |||| ||||||| |||||| | | ||||||||||||||||||||| || |||||| |
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| T |
5233 |
ttggtatccagagtatgaagccaagtgaaatcaccttggaaaaggcccttgaatttttatcag |
5171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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