View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20322_low_16 (Length: 224)
Name: NF20322_low_16
Description: NF20322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20322_low_16 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 26270779 - 26270900
Alignment:
| Q |
103 |
ctgaaattgcaaatttttaatcaaattcgtccctccctcggtttgtatttgtagggttagaatgacattaagttgatcattttgcaatcaaatagtgtca |
202 |
Q |
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| T |
26270779 |
ctgaaattgcaaatttttaatcaaattcgtccctccctcggtttgtatttgtagggttagaatgacattaagttgatcattttgcaatcaaatagtgtca |
26270878 |
T |
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| Q |
203 |
gagatgaataataaatttggac |
224 |
Q |
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| T |
26270879 |
gagatgaataataaattcggac |
26270900 |
T |
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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 26270661 - 26270748
Alignment:
| Q |
16 |
gcaggtaacatgaatctaacaataacatacatggttgtttggtcattaaatactcgaattagtctttgaaattgtagaactatatctc |
103 |
Q |
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| T |
26270661 |
gcaggtaacatgaatctaacaataacatacatggttgtttgctcattaaatactcgaattagtctttgaaattatagaactatatctc |
26270748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 9078297 - 9078329
Alignment:
| Q |
105 |
gaaattgcaaatttttaatcaaattcgtccctc |
137 |
Q |
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| T |
9078297 |
gaaattgcaaaattttaatcaaattcgtccctc |
9078329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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