View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20322_low_5 (Length: 344)
Name: NF20322_low_5
Description: NF20322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20322_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 4559264 - 4558948
Alignment:
| Q |
19 |
taagtgaaaattctaaagttcaaagtccgagagtacagcaaaaagactttccctcggattttgtcacggttgagcagtcgaattcaatcgaaggtagtaa |
118 |
Q |
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| T |
4559264 |
taagtgaaaattctaaagttcaaagtccgagagtacaacaaaaagactttccctcggattttgtcacggttgagcagtcgaattcaatcgaaggtagtaa |
4559165 |
T |
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| Q |
119 |
attaccaattgtcatcacgaaaccaacaaaagtgactagaaaagccaataatcctccttctacagaactgccaattcctgataaatctcgtctcagaaaa |
218 |
Q |
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| T |
4559164 |
attaccaattgtcatcacgaaaccaacaaaagtgactagaaaagccaataatcctccttctacagaactgccaattcctgataaatctcgtctcataaaa |
4559065 |
T |
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| Q |
219 |
tgttctccaacaaatggaagtttgatttgcaagcaaaaagctaaaggtattggttcaacaacaaaaattaccacaaaaccttttgctcaacaagttcctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4559064 |
tgttctccaacaaatggaagtttgatttgcaagcaaaaagctaaaggtattggttcaacaacaaaaattaccacaaaaccttttgctcaacaagttcctt |
4558965 |
T |
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| Q |
319 |
cagcagataagaataat |
335 |
Q |
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| T |
4558964 |
cagcagataagaataat |
4558948 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 5024711 - 5024617
Alignment:
| Q |
111 |
ggtagtaaattaccaattgtcatcacgaaaccaacaaaagtgactagaaaagccaataatcctccttctacagaactgccaattcctgataaatc |
205 |
Q |
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|||||||||| ||||||||||||| |||||||||||| || | |||||| | |||||| || |||| ||||| ||||||||| || |||||| |
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| T |
5024711 |
ggtagtaaatctccaattgtcatcatgaaaccaacaaaggttgcaagaaaaacaaataattcttcttcaccagaaatgccaattcatggtaaatc |
5024617 |
T |
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