View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20322_low_6 (Length: 340)
Name: NF20322_low_6
Description: NF20322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20322_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 142 - 322
Target Start/End: Original strand, 12666003 - 12666189
Alignment:
| Q |
142 |
gagggaatgtatactttttacttaatcttctttgtaaagttttcaaatacggtcgaacaatgggagcaataattgtgaaacacatgtgtata-------- |
233 |
Q |
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| T |
12666003 |
gagggaatgtatacattttacttaatctt---tgtaaagttttcaaatacggtcgaacaatgggagcaataattgtgaaacacatgtgtatatataatat |
12666099 |
T |
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| Q |
234 |
-atctcttttattttttctattaccatatttagatatagcacctttttccaaaggagtacattttcatttcctttcttcccccacttact |
322 |
Q |
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| T |
12666100 |
gatctcttttattttttctattaccatatttagatatagcacctttttccaaaggagtacattttcatttcctttcttcccccacttact |
12666189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 12665886 - 12665959
Alignment:
| Q |
23 |
aataacaacttaaagtcggaacaatttataaacagaaatttaatagaatctccttcaagcaaacagaatcatca |
96 |
Q |
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| T |
12665886 |
aataacaacttatagtcggaacaatttataaacagaaatttaatagaatctccttcaagcaaacagaatcatca |
12665959 |
T |
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