View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20322_low_9 (Length: 303)

Name: NF20322_low_9
Description: NF20322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20322_low_9
NF20322_low_9
[»] chr4 (1 HSPs)
chr4 (15-303)||(27725418-27725703)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 27725418 - 27725703
Alignment:
Q  15 atgaaggtgataaataacatgttctgtgtgactgtaatttgagcagctatgcttaggaaaaccaacttgttcggttccaatggtcaaagcaactttcacc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725418 atgaaggtgataaataacatgttctgtgtgactgtaatttgagcagctatgcttaggaaaaccaacttgttcggttccaatggtcaaagcaactttcacc 27725517  T
Q  115 ggtggcaatgatggttgtccagatattgtgaagacgcttgcaatccaagtgaagtgtggatgagttgagctagtagtgatttggttggtgaagttgatgg 214  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  27725518 ggtggcaatgatggttgtccagatgttgtgaagacgcttgcaatccaagtgaagtgtggatgagttgagc---tagtgatttggttggtgaagttgatgg 27725614  T
Q  215 agtccatgagctcaannnnnnnnnnnnnnnnnnnnnnngtagcaaaaaatacctgggaagattcatctttgtttttgacagacaaacat 303  Q
    |||||||||||||||                        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725615 agtccatgagctcaattttttgtttgttttatttttttttagcaaaaaatacctgggaagattcatctttgtttttgacagacaaacat 27725703  T

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