View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20323_high_2 (Length: 420)
Name: NF20323_high_2
Description: NF20323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20323_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 4 - 403
Target Start/End: Complemental strand, 8546369 - 8545961
Alignment:
| Q |
4 |
cggaattcatttggtacagaagttacaagtgattcggtgtgaaatcacttaccaatagtgaaaaacgaataagaggcatggttaaaatttacaaatagtg |
103 |
Q |
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| T |
8546369 |
cggaattcatttggtacagaagttacaagtgattcggtgtgaaatcacttaccaatagtgaaaaacgaataagaggcatggttaaaatttacaaatagtg |
8546270 |
T |
|
| Q |
104 |
aaatgaacttttttcttctattataaagatatccaaataatgg---------atgcttttatgcaataatgagtgactttatccatttatggggcttatc |
194 |
Q |
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| T |
8546269 |
aaatgaaattttttcttctattataaagatatccaaataatgatagtgtattatgcttttatgcaataatgagtgactttatccatttatggggcttatc |
8546170 |
T |
|
| Q |
195 |
ctattttgtagtgtgtcatggtatgagtttcttctgcatagccatccattatatactacagcagaggtacattaagttatattttctacttatagatctt |
294 |
Q |
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| T |
8546169 |
ctattttgtagtgtgtcatggtatgagtttcttctgcataaccatccattatatactacagcagaggtacattaagttatattttctacttatagatctt |
8546070 |
T |
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| Q |
295 |
cttttgtctttagcnnnnnnnnnnnnnncagtggaccatataatcatgcaatctcccacgcattttaaatagatgcaacacaaattcaatttcgaacata |
394 |
Q |
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| T |
8546069 |
cttttgtctttagcaaaaaaatgaaaaacagtggaccatataatcatgcaatctcccacgcattttaaatagatgcaacacaaattcaattttgaacata |
8545970 |
T |
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| Q |
395 |
tattctcat |
403 |
Q |
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| T |
8545969 |
ttttctcat |
8545961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 1582464 - 1582659
Alignment:
| Q |
65 |
aaaacgaataagaggcatggttaaaatttacaaatagtgaaatgaacttttttcttctattataaagatatccaaataatgg---------atgctttta |
155 |
Q |
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| T |
1582464 |
aaaacggataataggcttggttaaaatttacaaatagtgaaatgaaatattttcttctattataaatatatccaaatgatgataatgtatcatgcttata |
1582563 |
T |
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| Q |
156 |
tgcaataatgagtgactttatccatttatggggcttatcctattttgtagtgtgtcatggtatgagtttcttctgcatagccatccattatatact |
251 |
Q |
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| T |
1582564 |
tgcaatagtgagtgactttatccatatatggggtttatcctattttgtagagtgtcatggtatgagtttcttctgcataaccatccattatatact |
1582659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 65 - 251
Target Start/End: Complemental strand, 1602351 - 1602156
Alignment:
| Q |
65 |
aaaacgaataagaggcatggttaaaatttacaaatagtgaaatgaacttttttcttctattataaagatatccaaataatgg---------atgctttta |
155 |
Q |
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| T |
1602351 |
aaaacggataataggcttggttaaaatttacaaatagtgaaatgaaatattttcttctattataaatatatccaaatgatgataatgtatcatgcttata |
1602252 |
T |
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| Q |
156 |
tgcaataatgagtgactttatccatttatggggcttatcctattttgtagtgtgtcatggtatgagtttcttctgcatagccatccattatatact |
251 |
Q |
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| T |
1602251 |
tgcaatagtgagtgactttatccatatatggggtttatcctattttgtagagtgtcatggtatgagtttcttctgcataaccatccattatatact |
1602156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 252
Target Start/End: Original strand, 8532418 - 8532596
Alignment:
| Q |
82 |
tggttaaaatttacaaatagtgaaatgaacttttttcttctattataaagatatccaaataatgg---------atgcttttatgcaataatgagtgact |
172 |
Q |
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| T |
8532418 |
tggttaaattttagaaatagtgaaatgaaattttttcttctataataaa-atatccaaataatgatactatgttatgttttgatgcaatagtgagcgatt |
8532516 |
T |
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| Q |
173 |
ttatccatttatggggcttatcctattttgtagtgtgtcatggtatgagtttcttctgcatagccatccattatatacta |
252 |
Q |
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| T |
8532517 |
ttatccatttatggggtttgtccttatttgtaaagtgtcatggtatgaattacttctgaataaccatccattatatacta |
8532596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 9000790 - 9000854
Alignment:
| Q |
190 |
ttatcctattttgtagtgtgtcatggtatgagtttcttctgcatagccatccattatatactaca |
254 |
Q |
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| T |
9000790 |
ttatcctactttctagagtgccctggtatgagtttcttctgtataaccatccattatatactaca |
9000854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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