View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20323_low_1 (Length: 430)

Name: NF20323_low_1
Description: NF20323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20323_low_1
NF20323_low_1
[»] chr6 (11 HSPs)
chr6 (19-426)||(7926688-7927101)
chr6 (128-334)||(180320-180526)
chr6 (129-301)||(34837113-34837285)
chr6 (24-88)||(7929036-7929100)
chr6 (174-320)||(606625-606771)
chr6 (158-215)||(12143711-12143768)
chr6 (159-217)||(31116418-31116476)
chr6 (174-239)||(12453713-12453778)
chr6 (174-253)||(6657939-6658018)
chr6 (159-217)||(31117343-31117401)
chr6 (241-303)||(12144074-12144136)
[»] chr8 (20 HSPs)
chr8 (128-337)||(8251212-8251422)
chr8 (158-337)||(16890260-16890442)
chr8 (128-340)||(2207746-2207956)
chr8 (162-314)||(1445353-1445505)
chr8 (129-320)||(31658847-31659037)
chr8 (158-337)||(2520125-2520302)
chr8 (158-307)||(2152328-2152477)
chr8 (174-320)||(36054810-36054956)
chr8 (157-218)||(30653622-30653683)
chr8 (247-315)||(40694231-40694299)
chr8 (179-314)||(29916965-29917099)
chr8 (268-315)||(40696658-40696705)
chr8 (222-320)||(11778032-11778130)
chr8 (177-215)||(30870752-30870790)
chr8 (268-319)||(30112527-30112578)
chr8 (174-217)||(40314312-40314355)
chr8 (191-253)||(6396452-6396514)
chr8 (268-314)||(30654264-30654310)
chr8 (275-316)||(43836932-43836973)
chr8 (285-321)||(35431578-35431614)
[»] chr7 (19 HSPs)
chr7 (128-334)||(41508080-41508286)
chr7 (158-320)||(20949067-20949228)
chr7 (147-309)||(12506713-12506875)
chr7 (147-313)||(7307441-7307608)
chr7 (147-309)||(12485281-12485443)
chr7 (128-217)||(45072480-45072569)
chr7 (180-309)||(46341502-46341631)
chr7 (162-303)||(6549065-6549206)
chr7 (159-236)||(34470136-34470213)
chr7 (273-316)||(2195803-2195846)
chr7 (287-334)||(6549222-6549269)
chr7 (163-314)||(10599747-10599898)
chr7 (242-313)||(37048576-37048647)
chr7 (223-330)||(46101269-46101376)
chr7 (161-247)||(15033299-15033385)
chr7 (283-320)||(17205123-17205160)
chr7 (19-52)||(28914875-28914908)
chr7 (178-214)||(15028808-15028844)
chr7 (280-312)||(26195874-26195906)
[»] chr2 (22 HSPs)
chr2 (147-310)||(3268802-3268965)
chr2 (147-310)||(3269361-3269524)
chr2 (147-310)||(3269920-3270083)
chr2 (159-330)||(38214097-38214268)
chr2 (163-312)||(40503877-40504026)
chr2 (159-321)||(39063587-39063749)
chr2 (147-314)||(40442718-40442885)
chr2 (147-359)||(38496428-38496640)
chr2 (159-334)||(19285860-19286035)
chr2 (147-330)||(16781246-16781428)
chr2 (159-330)||(40664218-40664390)
chr2 (159-236)||(21794914-21794992)
chr2 (147-256)||(4015769-4015878)
chr2 (174-314)||(14200375-14200514)
chr2 (283-334)||(3711954-3712005)
chr2 (174-253)||(32872402-32872481)
chr2 (174-216)||(34309310-34309352)
chr2 (273-337)||(2761521-2761584)
chr2 (147-209)||(2761616-2761680)
chr2 (179-216)||(44883181-44883218)
chr2 (162-290)||(31404969-31405097)
chr2 (273-313)||(44883270-44883310)
[»] scaffold0024 (1 HSPs)
scaffold0024 (128-320)||(154334-154526)
[»] chr3 (21 HSPs)
chr3 (159-314)||(40344925-40345078)
chr3 (158-334)||(35455288-35455460)
chr3 (158-320)||(45261358-45261517)
chr3 (158-319)||(17003569-17003729)
chr3 (159-334)||(8825352-8825524)
chr3 (158-294)||(36659206-36659340)
chr3 (174-320)||(46918471-46918616)
chr3 (158-357)||(43320129-43320322)
chr3 (223-334)||(32211846-32211957)
chr3 (196-312)||(25295082-25295198)
chr3 (158-215)||(42279228-42279285)
chr3 (174-239)||(49983783-49983848)
chr3 (273-314)||(18085656-18085696)
chr3 (174-239)||(24650196-24650261)
chr3 (18-51)||(27636771-27636804)
chr3 (18-51)||(27639809-27639842)
chr3 (162-215)||(27828545-27828598)
chr3 (147-212)||(28695646-28695713)
chr3 (272-320)||(38854608-38854656)
chr3 (20-52)||(43598863-43598895)
chr3 (162-218)||(52427083-52427139)
[»] chr4 (16 HSPs)
chr4 (131-297)||(31707317-31707480)
chr4 (174-320)||(18838746-18838891)
chr4 (158-319)||(47231565-47231724)
chr4 (157-218)||(33721602-33721663)
chr4 (158-304)||(30615129-30615272)
chr4 (174-320)||(27032132-27032278)
chr4 (174-246)||(42183528-42183601)
chr4 (183-334)||(34319532-34319682)
chr4 (147-217)||(32599740-32599809)
chr4 (164-215)||(42312399-42312450)
chr4 (268-314)||(16572252-16572298)
chr4 (174-313)||(25376852-25376991)
chr4 (158-218)||(44720574-44720634)
chr4 (273-344)||(44884457-44884530)
chr4 (282-330)||(54863908-54863956)
chr4 (273-309)||(56093596-56093632)
[»] chr1 (22 HSPs)
chr1 (174-310)||(39150189-39150324)
chr1 (162-314)||(46443702-46443852)
chr1 (158-314)||(9851805-9851960)
chr1 (162-320)||(28165121-28165279)
chr1 (157-321)||(31181042-31181207)
chr1 (162-303)||(42454868-42455009)
chr1 (174-334)||(17971370-17971530)
chr1 (174-321)||(3574719-3574868)
chr1 (158-314)||(31152435-31152589)
chr1 (174-334)||(36437207-36437367)
chr1 (187-314)||(11435553-11435679)
chr1 (183-314)||(28469934-28470064)
chr1 (157-217)||(17988145-17988205)
chr1 (174-334)||(27442380-27442539)
chr1 (174-337)||(42745521-42745683)
chr1 (242-310)||(17988359-17988427)
chr1 (158-234)||(31003576-31003652)
chr1 (204-253)||(26976609-26976658)
chr1 (157-256)||(2619677-2619777)
chr1 (162-210)||(25130217-25130265)
chr1 (279-314)||(31003693-31003728)
chr1 (162-205)||(45691597-45691640)
[»] scaffold0088 (1 HSPs)
scaffold0088 (158-320)||(51267-51429)
[»] chr5 (13 HSPs)
chr5 (147-310)||(18705003-18705166)
chr5 (147-334)||(6688767-6688956)
chr5 (158-334)||(11691051-11691225)
chr5 (174-312)||(3629217-3629355)
chr5 (175-256)||(14417914-14417995)
chr5 (158-294)||(11983574-11983709)
chr5 (147-308)||(2225586-2225747)
chr5 (162-313)||(4449438-4449589)
chr5 (174-310)||(7735758-7735894)
chr5 (223-311)||(3257266-3257354)
chr5 (174-234)||(29948075-29948135)
chr5 (174-218)||(14917819-14917863)
chr5 (19-52)||(6447478-6447511)
[»] scaffold0836 (1 HSPs)
scaffold0836 (174-330)||(3006-3162)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 7927101 - 7926688
Alignment:
Q  19 gacaccccacttattcactttaaagatgaatttcaatcaatttacaaactcaacacaaacaaactaactactccctccggtctttattataagnnnnnnn 118  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||           
T  7927101 gacatcccacttattcactttaaagatgaatttcaatcaacttacaaactcaacacaaacaaactaattactccctccggtctttattataagaaaataa 7927002  T
Q  119 nnnnnnnnn-catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 217  Q
              ||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  7927001 aacaaaaaaacatcaaaaccaatacacacattaattagtataactttttgaataagattacaaatataccctcataaaaaattgtgaagcattaaataca 7926902  T
Q  218 ctctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaac 317  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  ||    
T  7926901 ctctttaatattaaaaagacaactattaaataaggggtatataagttttctaaaaaataattacactttaaaagttgtgatattttcttataaatatgac 7926802  T
Q  318 ca--atatcttttttgaaatttcttttatgcataagatcggaggagtaaattttaatttggagatttcggattc---aaaatctgttgctatcattgaaa 412  Q
    ||  || | |||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||    || |||||| | ||| |||||     
T  7926801 caacattttttttttgaaatttcttttatacataagaccagaggagtaagttttaatttggagatttcggattcgaagaactctgttaccatccttgaat 7926702  T
Q  413 aatagggaaatgtg 426  Q
    ||||||||||||||    
T  7926701 aatagggaaatgtg 7926688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 128 - 334
Target Start/End: Complemental strand, 180526 - 180320
Alignment:
Q  128 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 227  Q
    ||||||||||||||| |  |||||||||  |||||||||||||| ||||||||||||||||| |||||||||| |||| | |||||||||     |||||    
T  180526 catcaaaaccaatacactcattaattagtgtaactttttgaatatgtttacaaatatacccttataaaaaattttgaagcgttaaatacatcgactaata 180427  T
Q  228 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttt 327  Q
    || |||||||||  ||||||||||||||||| |||| || |||| ||||| |||| ||||||| ||||||||||||||||||||||| ||||| |  |||    
T  180426 ttaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattt 180327  T
Q  328 tttgaaa 334  Q
    |||||||    
T  180326 tttgaaa 180320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 129 - 301
Target Start/End: Original strand, 34837113 - 34837285
Alignment:
Q  129 atcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatat 228  Q
    ||||||| |||||| |  |||||||||  ||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||||  | |||||||    
T  34837113 atcaaaatcaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatat 34837212  T
Q  229 ttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatatt 301  Q
    | |||||||||  ||||||||||||||| | |||| || |||  ||||  |||||||||||||||| ||||||    
T  34837213 taaaaagacaagcattaaataaggggtaaaaaagtcttttaaacaatagctacaccttaaaagttgcgatatt 34837285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 7929100 - 7929036
Alignment:
Q  24 cccacttattcactttaaagatgaatttcaatcaatttacaaactcaacacaaacaaactaacta 88  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7929100 cccacttattcactttaaagatgaatttcaatcaacttacaaactcaacacaaacaaactaacta 7929036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 606625 - 606771
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||  |  ||||||| |||| |||   |||||||||||| |  | |||| || ||||      
T  606625 tttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaatacagtcattaaataagggattaaaaagtattttaagct 606724  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||    
T  606725 ataagtacaccttaaaagttgtgacattttcttataaataggaccaa 606771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 12143711 - 12143768
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 215  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||||| |||||||||    
T  12143711 taactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaata 12143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 31116476 - 31116418
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 217  Q
    ||||||||||||| ||||||||||||||||| ||| | |||||||||||||| ||||||    
T  31116476 aactttttgaatatgtttacaaatatacccttatagagaattgtgaaacattcaataca 31116418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 12453713 - 12453778
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 239  Q
    ||||||||||||| || ||||||| || |||||||||||| ||| || ||||||||||||||||||    
T  12453713 tttacaaatatactctaataaaaagttatgaaacattaaacacattcattaatatttaaaagacaa 12453778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 6658018 - 6657939
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 253  Q
    |||||||||||||||||||||||| |||||||  |||||||| || |  ||||||| |||||||||  ||||||| ||||    
T  6658018 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgaggg 6657939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 31117401 - 31117343
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 217  Q
    ||||||||||||| ||||||||||||||| | ||| | |||||||||||||| ||||||    
T  31117401 aactttttgaatatgtttacaaatatacctttatagagaattgtgaaacattcaataca 31117343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 12144074 - 12144136
Alignment:
Q  241 tattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatatttt 303  Q
    |||||||||| ||||||| |||| || |||  |||||||||||||||||| |||||| |||||    
T  12144074 tattaaataaagggtataaaagtcttttaaataataattacaccttaaaaattgtgacatttt 12144136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 128 - 337
Target Start/End: Complemental strand, 8251422 - 8251212
Alignment:
Q  128 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 227  Q
    ||||||||||||||| |  |||||||||  ||  ||||||||||  |||||||||||||||||||||||||||||||| ||||||||| ||||  |||||    
T  8251422 catcaaaaccaatacactcattaattagtgtagttttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataaactcactaata 8251323  T
Q  228 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaacc-aatatctt 326  Q
    || |||||||||| ||||||||| ||| | | | || || |||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||    
T  8251322 ttaaaaagacaaccattaaataatggggaaaaaggtcttttaagcaataattacaccttaaaagttgtgatattttcttataaataggaccaaatatttt 8251223  T
Q  327 ttttgaaattt 337  Q
    |||| ||||||    
T  8251222 ttttaaaattt 8251212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 337
Target Start/End: Original strand, 16890260 - 16890442
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatattt---aaaagacaactattaaataagggg 254  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||   |||| ||||  | ||||||| |||    
T  16890260 taactttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatatttataaaaaaacaaacaataaataaaggg 16890359  T
Q  255 tatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaattt 337  Q
    || | |||| ||  ||  | ||| || ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  16890360 tagaaaagtctttgaaacactaactataccttaaaagttgtgatattttcatataaataggaccaatatcatttttgaaattt 16890442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 128 - 340
Target Start/End: Complemental strand, 2207956 - 2207746
Alignment:
Q  128 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 227  Q
    ||||||||||| ||| |  |||| ||||  ||||||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||| | ||||||    
T  2207956 catcaaaaccattacactcattatttagtgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaagcattaaatacacccattaata 2207858  T
Q  228 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttt 327  Q
    || |||| ||||  ||||||||||||||| | || | ||  | | ||||| | || ||||||| ||||||||||||| ||||||||| |||||| | |||    
T  2207857 ttaaaaatacaaacattaaataaggggtagaaaattctttaacgcaataactgcatcttaaaaattgtgatattttc-tataaataggaccaattttttt 2207759  T
Q  328 tttgaaatttctt 340  Q
    ||| |||||||||    
T  2207758 tttaaaatttctt 2207746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 162 - 314
Target Start/End: Complemental strand, 1445505 - 1445353
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 261  Q
    ||||||||||  |||||||||||||| |||| |||||||||||||||||||||||||||  |||||| ||||||| ||  ||||||| |||| || | ||    
T  1445505 tttttgaatacttttacaaatataccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaacattaaat-agggatagaaaa 1445407  T
Q  262 gttttctaagaaataa-ttacaccttaaaagttgtgatattttcttataaatag 314  Q
    ||  | |||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  1445406 gtcatttaagcaataacttacaccttaaaagttgtgacattttcttataaatag 1445353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 129 - 320
Target Start/End: Complemental strand, 31659037 - 31658847
Alignment:
Q  129 atcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatat 228  Q
    ||||||| |||||| |  ||||||||| |||| ||||||||||  |||||||||||| ||||||||||| || || | |||||||||||  |  || |||    
T  31659037 atcaaaatcaatacactcattaattagtataattttttgaatatttttacaaatatatcctcataaaaa-ttatgcagcattaaatacatccactagtat 31658939  T
Q  229 ttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    | |||||||||  ||||||||| || || | |||| || |||  ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  31658938 taaaaagacaaacattaaataaaggttaaaaaagtcttttaaacaataactacatcttaaaagttgtgatattttcttataaatagaaccaa 31658847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 337
Target Start/End: Original strand, 2520125 - 2520302
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||| |||  |||||||||||| |  |  |||||||  | ||||     
T  2520125 taactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatactctcaataatatttaaaaaaggaacattaaat-ggaggtag 2520223  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaattt 337  Q
    | |||| |  |||| ||||| |||| ||||||| |||||| |||||||||||||| |||||||| | |||||| ||||||    
T  2520224 a-aagtctcttaagcaataactacatcttaaaatttgtgacattttcttataaattgaaccaatttttttttttaaattt 2520302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 158 - 307
Target Start/End: Complemental strand, 2152477 - 2152328
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatt-taaaagacaactattaaataaggggta 256  Q
    ||||||||||||||  |||| ||||||||||| ||||||||||||||| ||||||||| ||||  |||||||  |||||| ||  |||||||||||||||    
T  2152477 taactttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaagataaacattaaataaggggta 2152378  T
Q  257 tacaagttttctaagaaataattacaccttaaaagttgtgatattttctta 307  Q
     | |||| || |||| |||||  ||||||||||| ||||||||||||||||    
T  2152377 gaaaagtcttttaagtaataa-cacaccttaaaaattgtgatattttctta 2152328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 320
Target Start/End: Complemental strand, 36054956 - 36054810
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||| ||||||||||| || |||||||| |||  ||||||||||  |  ||||||| |||||||||  ||||| ||||||||||| |||| || |||  |    
T  36054956 tttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaaca 36054857  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    |||| || |||||||||||||||| |||||||||||||||| |||||    
T  36054856 ataaatataccttaaaagttgtgacattttcttataaataggaccaa 36054810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 30653622 - 30653683
Alignment:
Q  157 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 218  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  30653622 ataactttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacac 30653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 40694299 - 40694231
Alignment:
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaataga 315  Q
    |||||||||| | |||| || |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  40694299 ataaggggtagaaaagtcttttaagcaataattacacctaaaaagttgtgatattttcttataaataga 40694231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 29917099 - 29916965
Alignment:
Q  179 aaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataat 278  Q
    ||||||||||| | |||||| |||||| ||||||||||||||  ||||||| |||| | || |||||||| || | || | | ||||| |||| ||||||    
T  29917099 aaatataccctta-aaaaaactgtgaagcattaaatacactcactaatattaaaaaaagaagtattaaatgagagatagaaatgttttttaagtaataat 29917001  T
Q  279 tacaccttaaaagttgtgatattttcttataaatag 314  Q
    ||||  ||||||||||| | ||||| ||||||||||    
T  29917000 tacattttaaaagttgtaacatttttttataaatag 29916965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 40696658 - 40696705
Alignment:
Q  268 taagaaataattacaccttaaaagttgtgatattttcttataaataga 315  Q
    |||| |||||||||| || |||||||||||||||||||||||||||||    
T  40696658 taaggaataattacatctaaaaagttgtgatattttcttataaataga 40696705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 320
Target Start/End: Complemental strand, 11778130 - 11778032
Alignment:
Q  222 ttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    |||||||| |||||||||  |||||||||||| ||   |||| || || ||||||  |||| ||||||| ||||||  |||||||||||||||||||||    
T  11778130 ttaatattaaaaagacaaacattaaataagggttaagaaagtcttttacgaaatagatacatcttaaaaattgtgaccttttcttataaatagaaccaa 11778032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 30870752 - 30870790
Alignment:
Q  177 acaaatataccctcataaaaaattgtgaaacattaaata 215  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  30870752 acaaatatacccttataaaaaattgtgaaacattaaata 30870790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 30112527 - 30112578
Alignment:
Q  268 taagaaataattacaccttaaaagttgtgatattttcttataaatagaacca 319  Q
    |||| ||||| |||||||||||| |||||| |||||||||||||||| ||||    
T  30112527 taagcaataactacaccttaaaatttgtgacattttcttataaataggacca 30112578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 40314355 - 40314312
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaataca 217  Q
    |||||||||||| | |||||||||||| ||||||||||||||||    
T  40314355 tttacaaatatatcttcataaaaaattatgaaacattaaataca 40314312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 6396452 - 6396514
Alignment:
Q  191 ataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 253  Q
    |||||||  |||||||||||||||||||||  | ||||| ||||||||| | |||||||||||    
T  6396452 ataaaaatctgtgaaacattaaatacactcactgatattaaaaagacaattgttaaataaggg 6396514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 30654264 - 30654310
Alignment:
Q  268 taagaaataattacaccttaaaagttgtgatattttcttataaatag 314  Q
    |||| ||||| ||||| ||||||||||||||||||||||||| ||||    
T  30654264 taagcaataactacactttaaaagttgtgatattttcttatatatag 30654310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 43836973 - 43836932
Alignment:
Q  275 taattacaccttaaaagttgtgatattttcttataaatagaa 316  Q
    |||||||||||||||| |||| |||||||||||||| |||||    
T  43836973 taattacaccttaaaaattgtaatattttcttataattagaa 43836932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 35431614 - 35431578
Alignment:
Q  285 ttaaaagttgtgatattttcttataaatagaaccaat 321  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  35431614 ttaaaagttgtgacattttcttataaataggaccaat 35431578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 128 - 334
Target Start/End: Complemental strand, 41508286 - 41508080
Alignment:
Q  128 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 227  Q
    |||| |||||||||| |  |||||||||  |||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||| |  |||||    
T  41508286 catcgaaaccaatacacttattaattagtgtaactttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaata 41508187  T
Q  228 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttt 327  Q
    || |||||||||  ||||||||||||||| | |||| || |||| ||||| |||||||||||| ||||||||||||||||||  ||| |||||  | |||    
T  41508186 ttaaaaagacaaacattaaataaggggtaaaaaagtcttttaagcaataactacaccttaaaaattgtgatattttcttatatttaggaccaaatttttt 41508087  T
Q  328 tttgaaa 334  Q
    |||||||    
T  41508086 tttgaaa 41508080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 320
Target Start/End: Complemental strand, 20949228 - 20949067
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    ||||||| |||||| |   ||||||| |||| ||     
T  20949228 taactttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagacattaaat-agggataa 20949130  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    | || |  | |||| ||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  20949129 aaaaatcatttaagcaataactacaccttaaaagttatgacattttcttataaatagaaccaa 20949067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 12506875 - 12506713
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    |||||||||  |||||||||| |||   |||||||||||||||||||||||||||||||||| ||||||||||   | | ||| |||| | |   |||||    
T  12506875 attaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaacaaacacattaa 12506776  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttata 309  Q
    ||||||| || | |||| || | |  ||||| ||||||||||||||||| |||||||||||||    
T  12506775 ataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttcttata 12506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 147 - 313
Target Start/End: Complemental strand, 7307608 - 7307441
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    |||||||||  |||| ||||| |||  ||||||||||||| |||||||||||||||||| |||||||||||  |  ||||||| |||| ||||   ||||    
T  7307608 attaattagggtaaccttttgcatatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaacaaaccttaa 7307509  T
Q  247 ataaggggtat-acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaata 313  Q
    |||||||| || | || | || |||  ||||| ||| | ||||||||||||| |||||||||||||||    
T  7307508 ataaggggcataaaaaatcttttaaacaataactactctttaaaagttgtgacattttcttataaata 7307441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 12485443 - 12485281
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    |||||||||  |||||||||| |||   |||||||||||||||||||||||||||||||||| ||||||||||   | | ||| |||| | |   |||||    
T  12485443 attaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaacaaacacattaa 12485344  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttata 309  Q
    ||||||| || | |||| || | |  ||||| ||||||||||||||||| ||||||| |||||    
T  12485343 ataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttattata 12485281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 45072480 - 45072569
Alignment:
Q  128 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 217  Q
    ||||||||||||||| |  ||||||||| |||| ||||||||||  |||| |||||||| ||||||||||| |||||| |||||||||||    
T  45072480 catcaaaaccaatacactgattaattagtataattttttgaatatttttataaatatactctcataaaaaactgtgaagcattaaataca 45072569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 309
Target Start/End: Complemental strand, 46341631 - 46341502
Alignment:
Q  180 aatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataatt 279  Q
    ||||||||||| |||||| ||||||| |||||||||||| |  || |||  |||| | ||  | |||||||| |||| | |||| || |||| ||||| |    
T  46341631 aatataccctcgtaaaaagttgtgaagcattaaatacacccactattatcaaaaacaaaaacaataaataagtggtagagaagtcttttaagcaataact 46341532  T
Q  280 acaccttaaaagttgtgatattttcttata 309  Q
    ||||||||||||||||||||||||||||||    
T  46341531 acaccttaaaagttgtgatattttcttata 46341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 303
Target Start/End: Original strand, 6549065 - 6549206
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 261  Q
    ||||||||||  ||||| |||||||| | |||||||||||||||||||||||||||  |  ||   || |||||| ||| ||||| | | || || | ||    
T  6549065 tttttgaatatttttactaatataccttaataaaaaattgtgaaacattaaatacatccactatctttaaaaagaaaaccattaagtgaaggataaaaaa 6549164  T
Q  262 gttttctaagaaataattacaccttaaaagttgtgatatttt 303  Q
     | || |||||||||| || ||||||||||||||||||||||    
T  6549165 atcttttaagaaataactataccttaaaagttgtgatatttt 6549206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 34470213 - 34470136
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaaga 236  Q
    |||||||||||||  ||||||||||||  | | || |||||||||||| |||||||||||||  ||||||| ||||||    
T  34470213 aactttttgaatatttttacaaatataaacacttacaaaattgtgaaatattaaatacactcactaatattaaaaaga 34470136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 2195846 - 2195803
Alignment:
Q  273 aataattacaccttaaaagttgtgatattttcttataaatagaa 316  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||    
T  2195846 aataactacaccttaaaagttatgatattttcttatatatagaa 2195803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 6549222 - 6549269
Alignment:
Q  287 aaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
    |||||||||||||||||||||||||||| |||||  | ||||||||||    
T  6549222 aaaagttgtgatattttcttataaataggaccaaatttttttttgaaa 6549269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 10599747 - 10599898
Alignment:
Q  163 ttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaag 262  Q
    |||||||| | |||||||||||||||||||||||  |||||||  |||||||| || |  || |||| |||||| ||  ||||||| | || || | |||    
T  10599747 ttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaaggttagaaaag 10599846  T
Q  263 ttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 314  Q
    ||||  ||  ||||| |  |||| |||||||||||  |||||||||||||||    
T  10599847 tttttcaaacaataaatgtacctcaaaagttgtgactttttcttataaatag 10599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 37048647 - 37048576
Alignment:
Q  242 attaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaata 313  Q
    ||||||||| ||||| | |||| || |||  ||| | ||||| |||||||||||||||||||||||||||||    
T  37048647 attaaataaagggtagaaaagtcttttaaacaatcactacactttaaaagttgtgatattttcttataaata 37048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 46101269 - 46101376
Alignment:
Q  223 taatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaata 322  Q
    ||||||| ||| |||||  ||||||| ||||||| | |||| || | || ||||| |||| |||||||||| ||| |||||||||||||||  ||||||     
T  46101269 taatattaaaatgacaatcattaaatgaggggtagaaaagtcttttgagtaataactacaacttaaaagttatgacattttcttataaataagaccaatt 46101368  T
Q  323 tctttttt 330  Q
    | ||||||    
T  46101369 tttttttt 46101376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 15033299 - 15033385
Alignment:
Q  161 ctttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaa 247  Q
    |||||||||| | ||||||||||||| || ||||||| || ||||  ||| |||| ||||  ||||||| ||||||||| |||||||    
T  15033299 ctttttgaatgattttacaaatatactctaataaaaatttatgaattattgaatatactcactaatattgaaaagacaaatattaaa 15033385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 17205160 - 17205123
Alignment:
Q  283 ccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  17205160 ccttaaaagttgtgacattttcttataaataggaccaa 17205123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 28914908 - 28914875
Alignment:
Q  19 gacaccccacttattcactttaaagatgaatttc 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  28914908 gacaccccacttattcactttaaaggtgaatttc 28914875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 15028844 - 15028808
Alignment:
Q  178 caaatataccctcataaaaaattgtgaaacattaaat 214  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  15028844 caaatataccctcatgaaaaattgtgatacattaaat 15028808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 26195906 - 26195874
Alignment:
Q  280 acaccttaaaagttgtgatattttcttataaat 312  Q
    |||||||||||||||||| ||||||||||||||    
T  26195906 acaccttaaaagttgtgacattttcttataaat 26195874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 147 - 310
Target Start/End: Complemental strand, 3268965 - 3268802
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    ||||||||| |||||||||||||||  |||||||||||||||| ||||||| ||||||| | ||||||||||   |||||||| |||| | ||  |||||    
T  3268965 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3268866  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 310  Q
    |||||||||| | |||| || || | ||||| ||||||||||||||||||||||||||||||||    
T  3268865 ataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3268802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 147 - 310
Target Start/End: Complemental strand, 3269524 - 3269361
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    ||||||||| |||||||||||||||  |||||||||||||||| ||||||| ||||||| | ||||||||||   |||||||| |||| | ||  |||||    
T  3269524 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3269425  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 310  Q
    |||||||||| | |||| || || | ||||| ||||||||||||||||||||||||||||||||    
T  3269424 ataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 147 - 310
Target Start/End: Complemental strand, 3270083 - 3269920
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    ||||||||| |||||||||||||||  |||||||||||||||| ||||||| ||||||| | ||||||||||   |||||||| |||| | ||  |||||    
T  3270083 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3269984  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 310  Q
    |||||||||| | |||| || || | ||||| ||||||||||||||||||||||||||||||||    
T  3269983 ataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 159 - 330
Target Start/End: Complemental strand, 38214268 - 38214097
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 258  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||    ||||||| |||||| || |||||||| |||| ||||    
T  38214268 aactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatacacatactaatattaaaaagagaagtattaaatgagggatata 38214169  T
Q  259 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatctttttt 330  Q
     |||| || |||  ||||| |||||||||||||||||||  ||||||||||||| | ||||| || ||||||    
T  38214168 aaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaaaatttttttt 38214097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 163 - 312
Target Start/End: Complemental strand, 40504026 - 40503877
Alignment:
Q  163 ttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaag 262  Q
    |||||||||  |||||| ||||||||||||||||| ||||||| |||||||| |||    ||||||| |||||||||  | ||||||||||||||| |||    
T  40504026 ttttgaatatttttacagatataccctcataaaaagttgtgaagcattaaatgcacctactaatattaaaaagacaaacaataaataaggggtataaaag 40503927  T
Q  263 ttttctaagaaataattacaccttaaaagttgtgatattttcttataaat 312  Q
    |||| |||  ||||||||||||||||||||||||| ||||||||||||||    
T  40503926 ttttttaaacaataattacaccttaaaagttgtgacattttcttataaat 40503877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 159 - 321
Target Start/End: Original strand, 39063587 - 39063749
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 258  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| |  ||||||| |||||| || |||||||| ||   ||||    
T  39063587 aactttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacactaatattaaaaagagaagtattaaatgagcaatata 39063686  T
Q  259 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaat 321  Q
     |||| || |||  ||||| |||||||||||||||||||  ||||||||||||| | ||||||    
T  39063687 aaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaat 39063749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 314
Target Start/End: Complemental strand, 40442885 - 40442718
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    ||||||||| ||||  |||||||||  |||| | ||||||||| ||||||| ||||||| |||||||| |||    ||||||| |||||| ||  | |||    
T  40442885 attaattagtataatcttttgaatatttttatagatatacccttataaaaagttgtgaagcattaaatgcacctactaatattaaaaagataaacaataa 40442786  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 314  Q
    |||||||||||| ||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||    
T  40442785 ataaggggtataaaagttttttaaacaataattacaccttaaaagttgtgacattttcttataaatag 40442718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 147 - 359
Target Start/End: Complemental strand, 38496640 - 38496428
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    |||||||||  ||||||||||||||  |||||||||||||||| |||||||  || ||||||||||||||||    ||||||| |||| ||||   ||||    
T  38496640 attaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatacacctactaatattaaaaatacaaacgttaa 38496541  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaatttcttttatgc 346  Q
    |||||||||| | | || || |||  ||||| || ||||||||| || ||| |||||||||||||||| || || || |||||||||| || | ||||      
T  38496540 ataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacattttcttataaataggactaacatattttttgaaaattttcttatat 38496441  T
Q  347 ataagatcggagg 359  Q
    ||| |||||||||    
T  38496440 ataggatcggagg 38496428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 19286035 - 19285860
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 258  Q
    |||||||| ||||| |||||||||||| ||  ||| ||| ||||||| ||||||||||| ||  ||||||| ||||||||| |||||||| | || ||||    
T  19286035 aactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattgaaaagacaaatattaaatgaaggatata 19285936  T
Q  259 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
     |||| || || | ||||| |||||||||||| |||||| | || ||||||||||| |||||  | ||||||||||    
T  19285935 aaagtcttttatgcaataactacaccttaaaacttgtgacaattacttataaataggaccaaatttttttttgaaa 19285860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 330
Target Start/End: Complemental strand, 16781428 - 16781246
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    |||||||||  ||| ||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||    |||||||  ||||||||  |||||    
T  16781428 attaattagtctaattttttgaataattatacaaatataccctcattaaaaatggtgaaacattaaatacacctactaatattacaaagacaaacattaa 16781329  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatctttttt 330  Q
     ||||| ||| | |||| || |||  | |||||| ||||| ||||||||||  ||||||||||||||  |||||| | ||||||    
T  16781328 ctaaggcgtagaaaagtcttttaaacattaattatacctt-aaagttgtgactttttcttataaatatgaccaatgtttttttt 16781246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 330
Target Start/End: Complemental strand, 40664390 - 40664218
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatt-taaaagacaactattaaataaggggtat 257  Q
    |||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||| |   ||| ||  |||||| ||  ||||||| |||| |||    
T  40664390 aactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatacacacaccaatgttaaaaaagagaagcattaaatgagggatat 40664291  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatctttttt 330  Q
    | |||| || |||  ||||| ||||| |||| |||||||| |||||||||| ||| | |||||| | ||||||    
T  40664290 aaaagtcttttaaataataaatacactttaagagttgtgaaattttcttatcaattggaccaatttttttttt 40664218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 21794992 - 21794914
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataa-aaaattgtgaaacattaaatacactctttaatatttaaaaga 236  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |  ||||||| ||||||    
T  21794992 aactttttgaatatttttacaaatataccctcataaaaaaattgtgaaacattaaatacacacactaatattaaaaaga 21794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 4015769 - 4015878
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    |||||||||  ||||||||||||||| | || |||||||||||| | ||||||| ||||||||||||| |||    |||||||  ||||||||  |||||    
T  4015769 attaattagtctaactttttgaataattatataaatataccctcgttaaaaattatgaaacattaaatgcacctactaatattacaaagacaaacattaa 4015868  T
Q  247 ataaggggta 256  Q
     |||||||||    
T  4015869 ctaaggggta 4015878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 14200375 - 14200514
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaaga-caactattaaataaggggtatacaagttttctaaga 272  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||||  ||||||| |||||| |||| ||||||| |||| || | |||| || |||      
T  14200375 tttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattgaaaagatcaac-attaaatgagggttaaaaaagtcttttaaat 14200473  T
Q  273 aataattacaccttaaaagttgtgatattttcttataaatag 314  Q
    ||||| |  | ||||||||||||||  |||||||||||||||    
T  14200474 aataaatgtatcttaaaagttgtga-cttttcttataaatag 14200514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 3711954 - 3712005
Alignment:
Q  283 ccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
    ||||||||||||||| ||||||||||||||||||||||  | ||||||||||    
T  3711954 ccttaaaagttgtgacattttcttataaatagaaccaaatttttttttgaaa 3712005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 32872481 - 32872402
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 253  Q
    ||||||||||||||||||||||||||||||||  |||||||| || |  ||||||| ||| |||||  ||||||| ||||    
T  32872481 tttacaaatataccctcataaaaaattgtgaagtattaaatatacccactaatattaaaaggacaaacattaaattaggg 32872402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 34309352 - 34309310
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatac 216  Q
    |||||||||||||||||||||||| |||||||  |||||||||    
T  34309352 tttacaaatataccctcataaaaatttgtgaagtattaaatac 34309310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 2761584 - 2761521
Alignment:
Q  273 aataattacaccttaaaagttgtgatatttt--cttataaatagaaccaatatcttttttgaaattt 337  Q
    ||||||||||| |||||||||||||||||||   |||||||||| ||||||   |||||||||||||    
T  2761584 aataattacactttaaaagttgtgatatttttatttataaataggaccaat---ttttttgaaattt 2761521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 2761680 - 2761616
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatatac--cctcataaaaaattgtgaaacat 209  Q
    |||||||||  ||||||||||||||  |||| |||||||   |||||||||||||||||||||||    
T  2761680 attaattagtgtaactttttgaatatttttataaatatatatcctcataaaaaattgtgaaacat 2761616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 44883181 - 44883218
Alignment:
Q  179 aaatataccctcataaaaaattgtgaaacattaaatac 216  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  44883181 aaatatacccttataaaaagttgtgaaacattaaatac 44883218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 31405097 - 31404969
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 261  Q
    ||||||||||  |||||||||||| ||||||| ||| || ||||  |||||||| |  |  ||||||| ||||||||| |||||||| |||| || | ||    
T  31405097 tttttgaatatttttacaaatatatcctcatagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaatgagggttagaaaa 31404998  T
Q  262 gttttctaagaaataattacaccttaaaa 290  Q
    || || ||| |||||| |  |||||||||    
T  31404997 gtcttttaaaaaataaatgtaccttaaaa 31404969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 44883270 - 44883310
Alignment:
Q  273 aataattacaccttaaaagttgtgatattttcttataaata 313  Q
    ||||| || ||||||||| ||||||||||||||||||||||    
T  44883270 aataaatataccttaaaaattgtgatattttcttataaata 44883310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 128 - 320
Target Start/End: Complemental strand, 154526 - 154334
Alignment:
Q  128 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 227  Q
    ||||||||||||||| |  |||||||||  |||||| |||||||  |||||||| || ||||||||||||| |||||| |||||||||||| |   ||||    
T  154526 catcaaaaccaatacactcattaattagtgtaacttgttgaatatttttacaaacatgccctcataaaaaactgtgaagcattaaatacacccaccaata 154427  T
Q  228 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    || |||||||||  |||||||||  |||| | | || || |||  ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  154426 ttaaaaagacaaacattaaataaaaggtaaaaaggtcttttaaacaataactacaccttaaaagttgtaatattttcttataaatagaaccaa 154334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 159 - 314
Target Start/End: Original strand, 40344925 - 40345078
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 258  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||| | ||  |||||| ||||||||| |||||||| |||||||||    
T  40344925 aactttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaaatactcact--aatattaaaaagacaaatattaaatgaggggtata 40345022  T
Q  259 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 314  Q
     |||| |  |||| ||| | ||||||||||||||||||| ||||||||||| ||||    
T  40345023 aaagtctcttaagcaatgactacaccttaaaagttgtgacattttcttatagatag 40345078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 158 - 334
Target Start/End: Complemental strand, 35455460 - 35455288
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  | |||||||||||  ||||||||||||||||||||||||||||||||  |||||||| ||| | ||  ||||||| |||| ||     
T  35455460 taactttttgaatatttctacaaatatac--tcataaaaaattgtgaaacattaaatacactcactaatattt-aaatataaacattaaat-agggatag 35455365  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
    | ||||  | |||| ||||||||||||||||||||||||| |||||||||||||||  |||||| | ||||||||||    
T  35455364 aaaagtcatttaagcaataattacaccttaaaagttgtgacattttcttataaataagaccaattttttttttgaaa 35455288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 158 - 320
Target Start/End: Complemental strand, 45261517 - 45261358
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    |||||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||||| |  |||||||||||||| ||  |||||||| ||| ||     
T  45261517 taactttttgaacatttttacaaatataccctca--aaaaattgtgaaacattaaatacacccactaatatttaaaagagaaacattaaata-gggatag 45261421  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    | ||||  | |||| ||||| |||| |||||||||||||| |||||||||||||||| |||||    
T  45261420 aaaagtcatttaagcaataactacagcttaaaagttgtgacattttcttataaataggaccaa 45261358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 158 - 319
Target Start/End: Original strand, 17003569 - 17003729
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||| |  |||||||||||||| ||  ||||||| |||| ||     
T  17003569 taactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-agggataa 17003666  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgata-ttttcttataaatagaacca 319  Q
    | ||||  | |||| ||||| ||||||||||||||||||| | |||| |||||||||| ||||    
T  17003667 aaaagtcatttaagcaataactacaccttaaaagttgtgacattttttttataaataggacca 17003729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 334
Target Start/End: Original strand, 8825352 - 8825524
Alignment:
Q  159 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 258  Q
    |||||||| ||||  |||| ||||||||||| ||||||||||||| | |||||||||||||| |||||| |||||| | |   ||||||| | || || |    
T  8825352 aactttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaata-ttaaaataaagtcattaaatgaaggataga 8825450  T
Q  259 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
     |||| || |||| ||||| |||||||||||| |||||| |||||||||||||||| |||||| | ||||||||||    
T  8825451 aaagtcttttaagcaataactacaccttaaaa-ttgtgacattttcttataaataggaccaat-ttttttttgaaa 8825524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 36659340 - 36659206
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  ||||||| |||||||| |||||||||| ||||||||||||||||||| |||| |||  ||| | |||||||||||| ||| ||     
T  36659340 taactttttgaatatttttacaagtataccctaataaaaaattatgaaacattaaatacactcattaacatt--aaaaaaaactattaaataggggataa 36659243  T
Q  258 acaagttttctaagaaataattacaccttaaaagttg 294  Q
    | |||| |  |||| | ||| ||||||||||||||||    
T  36659242 aaaagtctcttaagcagtaactacaccttaaaagttg 36659206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 46918471 - 46918616
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||||||||||||||| ||| || ||| |||||||||||||||| || |||||||| ||||||||   ||||||| | || || | |||| || |||| |    
T  46918471 tttacaaatatacccttatagaatattttgaaacattaaatacattcattaatattaaaaagacagacattaaatgaaggataaaaaagtcttttaagca 46918570  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    |||| ||  |||||||| |||||| |||||||||||||||| |||||    
T  46918571 ataacta-tccttaaaaattgtgacattttcttataaataggaccaa 46918616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 357
Target Start/End: Original strand, 43320129 - 43320322
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  |||||||||| ||||| ||||||||| | ||| ||||||||||| ||  |||      ||||||||  ||| |||| ||| ||     
T  43320129 taactttttgaatatttttacaaatacacccttataaaaaatcgcgaagcattaaatacattcactaa------aaagacaaacattgaataggggctag 43320222  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaatttcttttatgcataagatcgga 357  Q
    | |||| || |||  |||||  |||||||||||||||||| ||||||||||||||||  ||||  | |||||||||| || | |||| ||||||||||||    
T  43320223 aaaagtcttttaaacaataaccacaccttaaaagttgtgacattttcttataaataggtccaaacttttttttgaaaattttattatacataagatcgga 43320322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 32211846 - 32211957
Alignment:
Q  223 taatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaata 322  Q
    ||||||| |||||||||  ||||||||| ||||| | |||| || |||  ||||| ||||||||||||||||||| |||||||||||||||  ||||| |    
T  32211846 taatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataaataagaccaaca 32211945  T
Q  323 tcttttttgaaa 334  Q
      ||||||||||    
T  32211946 atttttttgaaa 32211957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 25295082 - 25295198
Alignment:
Q  196 aaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgt 295  Q
    ||||||||||||||| |||| || |  ||||||| |||||| ||  ||||||| |||| || | |||| || |||  |||||||||||||||||||||||    
T  25295082 aaattgtgaaacatttaataaacccactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaacaataattacaccttaaaagttgt 25295181  T
Q  296 gatattttcttataaat 312  Q
     | ||||||||||||||    
T  25295182 aacattttcttataaat 25295198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 42279228 - 42279285
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 215  Q
    ||||||||| ||||  |||||||||||||||||||||||| || ||||| ||||||||    
T  42279228 taacttttttaatatttttacaaatataccctcataaaaatttatgaaatattaaata 42279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 49983848 - 49983783
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 239  Q
    |||||||||||||||||||||||| |||||||  |||||||| || |  ||||||| |||||||||    
T  49983848 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaa 49983783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 18085656 - 18085696
Alignment:
Q  273 aataattacaccttaaaagttgtgatattttcttataaatag 314  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  18085656 aataactacaccttaaaa-ttgtgatattttcttataaatag 18085696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 24650261 - 24650196
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 239  Q
    |||||||||||||  | |||||||||||||||| ||||||||  |||  ||||||| |||||||||    
T  24650261 tttacaaatatacttttataaaaaattgtgaaatattaaatatgctcactaatattaaaaagacaa 24650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 27636771 - 27636804
Alignment:
Q  18 agacaccccacttattcactttaaagatgaattt 51  Q
    ||||||| ||||||||||||||||||||||||||    
T  27636771 agacacctcacttattcactttaaagatgaattt 27636804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 27639809 - 27639842
Alignment:
Q  18 agacaccccacttattcactttaaagatgaattt 51  Q
    ||||||||||||||||||| ||||||||||||||    
T  27639809 agacaccccacttattcaccttaaagatgaattt 27639842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 27828598 - 27828545
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 215  Q
    ||||||||||  |||||||||||||| ||||||||| |||||||| | ||||||    
T  27828598 tttttgaatatttttacaaatataccttcataaaaatttgtgaaatactaaata 27828545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 28695713 - 28695646
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatat--accctcataaaaaattgtgaaacattaa 212  Q
    |||||||||  ||||||||||||||  |||||||||||  || || ||||||| ||||||||||||||    
T  28695713 attaattagtgtaactttttgaatatttttacaaatatacacgcttataaaaagttgtgaaacattaa 28695646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 38854656 - 38854608
Alignment:
Q  272 aaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    |||||| || || |||||||||||||  |||||||||||||||||||||    
T  38854656 aaataaatatactttaaaagttgtgaatttttcttataaatagaaccaa 38854608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 43598863 - 43598895
Alignment:
Q  20 acaccccacttattcactttaaagatgaatttc 52  Q
    ||||||||||||||||||||||| |||||||||    
T  43598863 acaccccacttattcactttaaaaatgaatttc 43598895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 52427083 - 52427139
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 218  Q
    |||||||||| ||||| || |||| ||||||||||| |||| ||| |||||||||||    
T  52427083 tttttgaatatgtttataattatatcctcataaaaagttgtaaaatattaaatacac 52427139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 131 - 297
Target Start/End: Original strand, 31707317 - 31707480
Alignment:
Q  131 caaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatattt 230  Q
    |||||||||||| |  |||||||||  ||||||||||||||  |||||||||||||||||||||||| || |||| |||   |||||| |  |||||||     
T  31707317 caaaaccaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaatttatgaagcat---atacacccactaatatta 31707413  T
Q  231 aaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtga 297  Q
    |||||||||  ||||||||||||||| | |||| ||||||| ||||| |||||||||||||||||||    
T  31707414 aaaagacaaacattaaataaggggtagaaaagtcttctaagcaataactacaccttaaaagttgtga 31707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 174 - 320
Target Start/End: Complemental strand, 18838891 - 18838746
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||||| ||  ||||||| | ||||| | |||| || |||  |    
T  18838891 tttacaaatataccctcataaaaaattgtgaaacattaaatacacccactaatattaaaaagataatcattaaatga-gggtagaaaagtcttttaaaca 18838793  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    ||||||| |||||||||||| ||| ||||||| ||||||||||||||    
T  18838792 ataattataccttaaaagttatgacattttctcataaatagaaccaa 18838746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 319
Target Start/End: Original strand, 47231565 - 47231724
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  ||||||| |||||| ||||||||| ||||||| |||||||||||||  ||||||||  ||||||||| |||||||||| ||||     
T  47231565 taactttttgaatatttttacaattatacc-tcataaaaagttgtgaatcattaaatacacttgttaatattataaagacaac-attaaataagaggtaa 47231662  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaacca 319  Q
    | || | || |||  ||||| || | |||||||||  ||| ||||||||||||||| |||||    
T  47231663 aaaaatcttttaaacaataaatatatcttaaaagtattgacattttcttataaataaaacca 47231724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 33721602 - 33721663
Alignment:
Q  157 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 218  Q
    |||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  33721602 ataactttttcaataattttacaaacatactctcataaaaaattgtgaaacattaaatacac 33721663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 304
Target Start/End: Complemental strand, 30615272 - 30615129
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactct-ttaatatttaaaagacaactattaaataaggggta 256  Q
    ||||||||| ||||  |||||||||| ||| | |||||||||| |||||||||||||||| |||  ||||||| |||||||||||||||||| |  |  |    
T  30615272 taactttttaaatatttttacaaatacacctttataaaaaattatgaaacattaaataca-tctactaatattaaaaagacaactattaaatgaatg--a 30615176  T
Q  257 tacaagttttctaagaaataattacaccttaaaagttgtgatattttc 304  Q
    || || | || |||| |||||||||| |||||||||||||||||||||    
T  30615175 taaaaatcttttaagtaataattaca-cttaaaagttgtgatattttc 30615129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 320
Target Start/End: Complemental strand, 27032278 - 27032132
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||| |   ||||||| ||||  |||  |||| || || |||| ||| || || |||| |    
T  27032278 tttacaaatatacccttatagaaagttgtgaaatattaaatacatttactaatattaaaaaagcaatcattacatgagaggtagacaggtcttttaagca 27032179  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    || || ||||||||| | ||||||||||||| |||||||||||||||    
T  27032178 attatcacaccttaagaattgtgatattttcctataaatagaaccaa 27032132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 42183601 - 42183528
Alignment:
Q  174 tttacaaatataccctcataaaaaa-ttgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    |||||||||||| |||||||||||| ||||||| ||||||||| || | |||||||| ||||||||||||||||    
T  42183601 tttacaaatatatcctcataaaaaaattgtgaagcattaaataaacacattaatattaaaaagacaactattaa 42183528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 334
Target Start/End: Complemental strand, 34319682 - 34319532
Alignment:
Q  183 ataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattaca 282  Q
    |||||||||||||||||||| |||||||||||| |  | | |||||| |||||| ||  |||||||||||| || | ||| ||| |||  |||||   ||    
T  34319682 ataccctcataaaaaattgtaaaacattaaatatatccataaatattaaaaagaaaaacattaaataaggg-tagaaaagctttttaaacaataaccgca 34319584  T
Q  283 ccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
    | |||||| |||||| |||||||||||||||| |||||  | ||||||||||    
T  34319583 ctttaaaaattgtgacattttcttataaataggaccaagtttttttttgaaa 34319532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 32599740 - 32599809
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 217  Q
    ||||||||| | |||||||| ||||| |||| ||||||||| ||||||||||||||||| |||||||||||    
T  32599740 attaattagtaaaacttttt-aataattttataaatataccttcataaaaaattgtgaagcattaaataca 32599809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 42312399 - 42312450
Alignment:
Q  164 tttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 215  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||| |||||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaata 42312450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 16572298 - 16572252
Alignment:
Q  268 taagaaataattacaccttaaaagttgtgatattttcttataaatag 314  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  16572298 taagcaataactacaccttaaaagttgtgacattttcttataaatag 16572252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 313
Target Start/End: Original strand, 25376852 - 25376991
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaaga-caactattaaataaggggtatacaagttttctaaga 272  Q
    ||||||||||||||||| |||||| |||||||  |||||||| ||||   |||||| |||||| |||| ||||||| |||| || | |||| || |||      
T  25376852 tttacaaatataccctcttaaaaatttgtgaagtattaaatatactcacaaatattgaaaagatcaac-attaaatgagggttagaaaagtcttttaaac 25376950  T
Q  273 aataattacaccttaaaagttgtgatattttcttataaata 313  Q
    |||||||| |||||||||  |||||  ||||||| ||||||    
T  25376951 aataattataccttaaaatctgtgactttttcttgtaaata 25376991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 44720574 - 44720634
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 218  Q
    |||| |||||||||  |||| ||||||| |||||||||||||||  |||||||||||||||    
T  44720574 taacattttgaatatttttataaatatatcctcataaaaaattgcaaaacattaaatacac 44720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 44884457 - 44884530
Alignment:
Q  273 aataattacaccttaaaa--gttgtgatattttcttataaatagaaccaatatcttttttgaaatttcttttat 344  Q
    ||||| ||||||||||||  ||||||| ||||||||||| |||| ||||| | |||||||||| ||| ||||||    
T  44884457 aataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaacttttttgaattttattttat 44884530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 54863956 - 54863908
Alignment:
Q  282 accttaaaagttgtgatattttcttataaatagaaccaatatctttttt 330  Q
    ||||||||||||||||  ||||||||||||||| |||||| | ||||||    
T  54863956 accttaaaagttgtgactttttcttataaataggaccaatttttttttt 54863908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 56093632 - 56093596
Alignment:
Q  273 aataattacaccttaaaagttgtgatattttcttata 309  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  56093632 aataattacaccttaaaagttatgatatttttttata 56093596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 174 - 310
Target Start/End: Original strand, 39150189 - 39150324
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||| |||||||| |||| | ||  ||||||||||||||| | |||| || |||| |    
T  39150189 tttacaaatataccctcataaaag-ttgtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaagca 39150287  T
Q  274 ataattacaccttaaaagttgtgatattttcttataa 310  Q
    |||| |||||||||||||| |||||||||||||||||    
T  39150288 ataactacaccttaaaagtagtgatattttcttataa 39150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 162 - 314
Target Start/End: Complemental strand, 46443852 - 46443702
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 261  Q
    ||||||||||  ||||||||||||||| |||||||| ||||||||||||| ||||| ||  ||| ||| |||||| |||||| |||| |||| || | ||    
T  46443852 tttttgaatatttttacaaatatacccacataaaaa-ttgtgaaacattatatacattcactaacattaaaaagagaactat-aaatgagggataaaaaa 46443755  T
Q  262 gttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 314  Q
    ||||| |||| |||||||||||||||||||||||||  |||||||||||||||    
T  46443754 gttttttaagtaataattacaccttaaaagttgtgacgttttcttataaatag 46443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 314
Target Start/End: Original strand, 9851805 - 9851960
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  |||||||||||||| | |||||| | |||||||||||||||| || |  |||||||||||||| ||  ||||||| |||| ||     
T  9851805 taactttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaacattaaat-agggataa 9851903  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 314  Q
    | | ||  | |||| ||||| ||||| ||||||||||||| ||||||||||||||||    
T  9851904 aaaggtcatttaagcaataactacactttaaaagttgtgacattttcttataaatag 9851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 320
Target Start/End: Original strand, 28165121 - 28165279
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactct-ttaatatttaaaagacaactattaaataaggggtataca 260  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||   |||||| |||||| ||  | | ||| ||||||| | |    
T  28165121 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaataca-tctaccaatattaaaaagataaagacttaatgaggggtaaaaa 28165219  T
Q  261 agttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    | | || |||| ||||| || ||||| |||||||||| ||||| ||||||||||||||||    
T  28165220 aatcttttaagcaataactatacctttaaagttgtgacattttattataaatagaaccaa 28165279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 321
Target Start/End: Original strand, 31181042 - 31181207
Alignment:
Q  157 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatt-taaaagacaactattaaataaggggt 255  Q
    |||||||||||||||  ||||||| |||||||| ||| ||||||||||||||||||||||||||  |||||||  |||| | ||  ||||||| | | ||    
T  31181042 ataactttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatacactcgctaatattaaaaaaaaaaaacattaaatgaagtgt 31181141  T
Q  256 atacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaat 321  Q
    | | |||| || |||  ||||| || |  ||||||||||||| ||||||||||||||| |||||||    
T  31181142 aaaaaagtcttttaaacaataactataagttaaaagttgtgacattttcttataaataaaaccaat 31181207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 303
Target Start/End: Original strand, 42454868 - 42455009
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 261  Q
    ||||||||||  |||| |||||||||||||||||||||| |||| ||||||||||||||  ||||||| |||||||||   ||||||||  || ||| ||    
T  42454868 tttttgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaagacaaacgttaaataaaaggcataaaa 42454967  T
Q  262 gttttctaagaaataattacaccttaaaagttgtgatatttt 303  Q
    || || |||  | | | ||||||||||||||||||| |||||    
T  42454968 gtcttttaaacattcactacaccttaaaagttgtgacatttt 42455009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 174 - 334
Target Start/End: Original strand, 17971370 - 17971530
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    ||||||||||||||||| |||||| |||||||  |||||||| || |  ||||||| ||||||| |  ||||||| |||| || | |||| || |||  |    
T  17971370 tttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaatgagggttagaaaagtcttttaaaca 17971469  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
    |||| || ||||||||||||||||  ||||||||||||||| ||||| |  ||||||||||    
T  17971470 ataaatataccttaaaagttgtgactttttcttataaataggaccaaaacgttttttgaaa 17971530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 3574868 - 3574719
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactct--ttaatatttaaaagacaactattaaataaggggtatacaagttttctaag 271  Q
    |||| |||||||| || |||||||||||||||| |||||||||| ||   |||||||| ||| || ||  ||||||| ||||||| |||| |||| |||     
T  3574868 tttataaatatactcttataaaaaattgtgaaatattaaatacattcaaattaatattaaaatgataaacattaaatgaggggtagacaaattttttaaa 3574769  T
Q  272 aaataattacaccttaaaagttgtgatattttcttataaatagaaccaat 321  Q
     ||||| ||||  | ||||||||||| |||||||||||||||| ||||||    
T  3574768 caataactacatttgaaaagttgtgacattttcttataaataggaccaat 3574719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 314
Target Start/End: Complemental strand, 31152589 - 31152435
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  ||||||||||||| ||||||||||  |||||||||||||||||  ||  ||||| |||||||| ||  ||||||| |||||||     
T  31152589 taactttttgaatatttttacaaatatacgctcataaaaa--tgtgaaacattaaatacgttcactaata-ttaaaagagaaacattaaatgaggggtag 31152493  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattt-tcttataaatag 314  Q
      |||| || |||| |||||  ||| ||||||||||||||||||| | ||||||||||    
T  31152492 caaagtcttttaagcaataacgacatcttaaaagttgtgatatttcttttataaatag 31152435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 334
Target Start/End: Original strand, 36437207 - 36437367
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaataca-ctctttaatatttaaaagacaactattaaataaggggtatacaagttttctaaga 272  Q
    |||||||||||||||| ||| ||  ||||||||||||||||||| | |  ||||||| ||||||||   ||||||| |||| || | |||| || ||||     
T  36437207 tttacaaatatacccttatagaatgttgtgaaacattaaatacatcccactaatattaaaaagacagacattaaatgagggataaaaaagtcttttaagc 36437306  T
Q  273 aataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
    ||||| ||  ||||||||||||||| |||||||||||||||| ||||| |  ||||||||||    
T  36437307 aataactat-ccttaaaagttgtgacattttcttataaataggaccaaaactttttttgaaa 36437367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 11435679 - 11435553
Alignment:
Q  187 cctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacacctt 286  Q
    ||||||||||||||||||  |||||||||||  |  ||||||| |||| ||||  |||||||||  | |||| ||||||| |||  |||||||| |||||    
T  11435679 cctcataaaaaattgtgatgcattaaatacatccactaatattaaaaaaacaaacattaaataaatgatataaaagtttt-taaacaataattatacctt 11435581  T
Q  287 aaaagttgtgatattttcttataaatag 314  Q
    | ||||||||| ||||||||||||||||    
T  11435580 ataagttgtgacattttcttataaatag 11435553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 28470064 - 28469934
Alignment:
Q  183 ataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattaca 282  Q
    |||| ||||||||||||||||||||||||||||||| |   ||||||||||||| ||  ||||||||| || || | |||   | |||| ||||| ||||    
T  28470064 atactctcataaaaaattgtgaaacattaaatacacccacaaatatttaaaagagaaacattaaataa-ggatagaaaagacatttaagtaataactaca 28469966  T
Q  283 ccttaaaagttgtgatattttcttataaatag 314  Q
    |||||||| |||||| ||||| ||||||||||    
T  28469965 ccttaaaatttgtgacatttttttataaatag 28469934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 17988145 - 17988205
Alignment:
Q  157 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 217  Q
    |||||||||  ||||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  17988145 ataacttttaaaataattttacaaatatatcctcataataaattgtgaaacattaaataca 17988205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 334
Target Start/End: Original strand, 27442380 - 27442539
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||||||||||| ||||||||||| |||||||  |||||||| || | |||||||| |||   |||| ||||||| |||| || | |||| || |||  |    
T  27442380 tttacaaatatatcctcataaaaatttgtgaagtattaaatatacccattaatattgaaagaccaac-attaaatgagggttagaaaagtcttttaaaca 27442478  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
     ||| || || |||||||||||||| ||||||||||||||| |||||  | ||||||||||    
T  27442479 ctaaatatactttaaaagttgtgattttttcttataaataggaccaagtttttttttgaaa 27442539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 337
Target Start/End: Complemental strand, 42745683 - 42745521
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||  |  ||||||| ||||| |||   |||||| |||| || | |||| || |||  |    
T  42745683 tttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaaggcaatccttaaatgagggataaa-aagtattttaaaca 42745585  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaattt 337  Q
    ||||||| || | |||| |||||| |||||||||||||||| |||||  | |||||||||||||    
T  42745584 ataattatacttcaaaaattgtgacattttcttataaataggaccaaatttttttttgaaattt 42745521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 17988359 - 17988427
Alignment:
Q  242 attaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 310  Q
    ||||||||||||||| | |||| || |||  ||||| ||||||||||||||||||| ||||||||||||    
T  17988359 attaaataaggggtaaaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataa 17988427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 31003576 - 31003652
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaa 234  Q
    ||||||||||||||  |||||||||||||| | ||| |||||||| |||||||||||||| ||  ||||||| ||||    
T  31003576 taactttttgaatatttttacaaatatacctttatagaaaattgttaaacattaaatacattcgctaatattaaaaa 31003652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 26976609 - 26976658
Alignment:
Q  204 aaacattaaatacactctttaatatttaaaagacaactattaaataaggg 253  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||| ||||    
T  26976609 aaacattaagtacactctttaatattaaaaagacaaatattaaatgaggg 26976658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 2619677 - 2619777
Alignment:
Q  157 ataactttttgaataagtttacaaatataccctcat-aaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggt 255  Q
    |||||||||||||||  | | ||| ||||||||||| |||||||||| || |||||||| || ||| |||| ||||||| ||||  ||||||| ||||||    
T  2619677 ataactttttgaatatttgtgcaattataccctcataaaaaaattgtcaagcattaaatgcattctctaatgtttaaaaaacaaacattaaatgaggggt 2619776  T
Q  256 a 256  Q
    |    
T  2619777 a 2619777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 25130265 - 25130217
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacatt 210  Q
    ||||||||||  |||||||||||||| ||||| ||||||||||||||||    
T  25130265 tttttgaatacttttacaaatataccatcatagaaaattgtgaaacatt 25130217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 314
Target Start/End: Original strand, 31003693 - 31003728
Alignment:
Q  279 tacaccttaaaagttgtgatattttcttataaatag 314  Q
    ||||||||||||||||||| ||||||||||||||||    
T  31003693 tacaccttaaaagttgtgacattttcttataaatag 31003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 45691597 - 45691640
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaa 205  Q
    ||||||||||  |||||||||||||||||||||||| |||||||    
T  45691597 tttttgaatatttttacaaatataccctcataaaaatttgtgaa 45691640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 158 - 320
Target Start/End: Complemental strand, 51429 - 51267
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    |||| |||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||    ||| ||| |||||| || |||||||| |||| ||     
T  51429 taacattttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaaagagaattattaaatgagggataa 51330  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 320  Q
    | || | || |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  51329 aaaaatcttttaagcaataaatacaccttaaaagttgtgacatttacttataaatagaaccaa 51267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 147 - 310
Target Start/End: Complemental strand, 18705166 - 18705003
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    |||||||||  ||||||||||||||  |||||||||||| ||| ||||||| ||||||| ||||||||||||   |||||||| |||| | ||  |||||    
T  18705166 attaattagtgtaactttttgaatatttttacaaatatatccttataaaaagttgtgaagcattaaatacacctattaatattaaaaacaaaaacattaa 18705067  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 310  Q
    |||| ||||| | |||| || |||| ||||| ||||||||||||||| |||| |||||||||||    
T  18705066 ataaagggtaaaaaagtcttttaagtaataactacaccttaaaagttatgatgttttcttataa 18705003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 147 - 334
Target Start/End: Complemental strand, 6688956 - 6688767
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa--ctatt 244  Q
    |||||||||  |||||||||| |||   |||||||||||||||||||||||||||| || |||||||||||||   |||||| | ||| ||||   ||||    
T  6688956 attaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtaaagcattaaatacacttactaatatattaaaaacaaacatatt 6688857  T
Q  245 aaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
    ||||||||| || | |||| || |||  ||||| |||||||||||||||||||||||||||||||  ||| ||||  || ||||||||||    
T  6688856 aaataagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgatattttcttatatttaggaccataatattttttgaaa 6688767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 158 - 334
Target Start/End: Original strand, 11691051 - 11691225
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  |||||||||| | |||||||||| ||| ||||| |||||||||||||  ||| ||| |||||| ||  ||||||| ||||  ||    
T  11691051 taactttttgaatatttttacaaatacatcctcataaaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaatgaggg--at 11691148  T
Q  258 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 334  Q
    | |||| || |||||||||| ||||||| |||| ||| || ||||  |||||||||| |||||| | ||||||||||    
T  11691149 agaagtcttttaagaaataactacacctaaaaaattgcgacatttgtttataaataggaccaatttattttttgaaa 11691225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 3629217 - 3629355
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||||||||||| ||| ||| ||  ||||||||||||||||||| ||  ||||||| |||| |||   ||||||| |||| || | |||| || |||| |    
T  3629217 tttacaaatataaccttatagaatgttgtgaaacattaaatacattcactaatattaaaaatacagtcattaaattagggatacaaaagtcttttaagta 3629316  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaat 312  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  3629317 ataactacaccttaaaagttgtgacattttcttataaat 3629355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 14417995 - 14417914
Alignment:
Q  175 ttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggta 256  Q
    |||||||| |||| ||||||||||||||||| |||||||||||| |  |||||||||||| |||| ||||||| ||||||||    
T  14417995 ttacaaatttaccttcataaaaaattgtgaagcattaaatacacccactaatatttaaaatacaaatattaaacaaggggta 14417914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 11983574 - 11983709
Alignment:
Q  158 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 257  Q
    ||||||||||||||  ||||||||||||| ||  ||||| ||||||||||||||||||||  |  ||||||| |||||| ||  ||||||| |||||||     
T  11983574 taactttttgaatacttttacaaatatactcttgtaaaa-attgtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggtaa 11983672  T
Q  258 acaagttttctaagaaataattacaccttaaaagttg 294  Q
    | || | || |||  ||||||||||||||||||||||    
T  11983673 aaaaatcttttaaacaataattacaccttaaaagttg 11983709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 308
Target Start/End: Complemental strand, 2225747 - 2225586
Alignment:
Q  147 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 246  Q
    |||||||||  ||||||||  ||||  |||||||||||||| ||||||||| |||||||||||||||||||  |  ||||||| |||| | ||  |||||    
T  2225747 attaattagtgtaacttttgaaatatttttacaaatataccttcataaaaagttgtgaaacattaaatacaaccactaatattaaaaacaaaaacattaa 2225648  T
Q  247 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttat 308  Q
    ||||  |||| | |||| || |||  ||| ||  ||||||||| |||||||| |||||||||    
T  2225647 ataaatggtagaaaagtcttttaaacaatcatgtcaccttaaatgttgtgatgttttcttat 2225586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 313
Target Start/End: Complemental strand, 4449589 - 4449438
Alignment:
Q  162 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactatt-aaataaggggtataca 260  Q
    ||||||||||  ||||||||||||||||||| | ||||||||  ||||||||||||  | |||| ||| |||||||||  ||| |||| | ||||| | |    
T  4449589 tttttgaatatttttacaaatataccctcatgagaaattgtg--acattaaatacaaccattaagattaaaaagacaaacattgaaatga-gggtaaaaa 4449493  T
Q  261 agttttctaagaaataatt--acaccttaaaagttgtgatattttcttataaata 313  Q
    ||| || |||||||||| |  ||||||||||| |||||| |||||||||||||||    
T  4449492 agtcttttaagaaataaatacacaccttaaaaattgtgacattttcttataaata 4449438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 7735894 - 7735758
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| |  ||||||| |||| | ||  |||||||||  | || | ||||||| |||| |    
T  7735894 tttacaaatatacccttataaaaaattgtcaaacattaaatacacccgctaatattaaaaacaaaaacattaaataattgatagaaaagttttttaagta 7735795  T
Q  274 ataattacaccttaaaagttgtgatattttcttataa 310  Q
    |||| | ||  | |||||| | |||||||||||||||    
T  7735794 ataactgcaattcaaaagtagcgatattttcttataa 7735758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 3257266 - 3257354
Alignment:
Q  223 taatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaa 311  Q
    ||||||| |||||||||  |||||||||| | || | |||| || |||  |||| |||| |||||||||||||||||||||||||||||    
T  3257266 taatattaaaaagacaaacattaaataagagatagaaaagtcttttaaacaatagttacgccttaaaagttgtgatattttcttataaa 3257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 29948075 - 29948135
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaa 234  Q
    ||||||||||||| || |||||||||| | ||||||||||||||||| |||||||| ||||    
T  29948075 tttacaaatatactctaataaaaaattataaaacattaaatacactcattaatattaaaaa 29948135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 14917863 - 14917819
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacac 218  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||    
T  14917863 tttacaaatataccctcgtaaaaaattgtgaagaattaaatacac 14917819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 6447511 - 6447478
Alignment:
Q  19 gacaccccacttattcactttaaagatgaatttc 52  Q
    |||||||||||||||||||||||| |||||||||    
T  6447511 gacaccccacttattcactttaaaaatgaatttc 6447478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 3162 - 3006
Alignment:
Q  174 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 273  Q
    |||||||| || |||| ||| ||  |||||||||||||||||||  |  ||||||| |||||| || |||| ||| |||| || | |||| || |||  |    
T  3162 tttacaaacatgcccttatagaatgttgtgaaacattaaatacatccactaatattaaaaagagaattattgaatgagggatagaaaagtcttttaaaca 3063  T
Q  274 ataattacaccttaaaagttgtgatattttcttataaatagaaccaatatctttttt 330  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||| | |||||||    
T  3062 ataactacaccttaaaagttgtgacattttcttataaataggaccaaaaactttttt 3006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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