View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20324_high_2 (Length: 400)
Name: NF20324_high_2
Description: NF20324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20324_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 136 - 376
Target Start/End: Original strand, 34697071 - 34697312
Alignment:
| Q |
136 |
aacaaactgatttaaatcctagtttgaacaannnnnnnatcaaactttacttatgtgtcaaactctaaatttcctatagtcccttcttaaaaaacagaag |
235 |
Q |
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| T |
34697071 |
aacaaactgatttaaatcctagttttaacaatttttttatcaaactttacttatgtgtcaaactctaaattacctatagtcccttcttaaaaaacagaag |
34697170 |
T |
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| Q |
236 |
gtttggacataatatatatcaatatttacatgtgtttgtgtgggcgcgtgtgcgcacacccagaatgt-acgcacggggtatggttatgttctataatat |
334 |
Q |
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| T |
34697171 |
gtttggacaaaatatatatcaatatttacatgtgtttgtgtgggcgcccgtgcgcacacccagaatttaaagcacggggtatggttatgttctataatat |
34697270 |
T |
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| Q |
335 |
ctcatggacgtgcgcaatgttcatggcttcatttggttgatg |
376 |
Q |
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| T |
34697271 |
ctcatggacgtgtgcaatgttcatggcttcatttggttgatg |
34697312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 34695237 - 34695344
Alignment:
| Q |
31 |
ccattcctctttactggtgatcaatttcaaggtaataaatattcatttttataaagtgattgaacttaagtggtaaataatttcaattaaagatgaatat |
130 |
Q |
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| T |
34695237 |
ccattcctctttactggtgatcaatttcaaggtaataaatattaatttttataaagtgattgaacttaagtggtaaataatttcaattaaagatgaatat |
34695336 |
T |
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| Q |
131 |
ttgaaaac |
138 |
Q |
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| T |
34695337 |
ttgaaaac |
34695344 |
T |
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