View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20324_high_7 (Length: 334)

Name: NF20324_high_7
Description: NF20324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20324_high_7
NF20324_high_7
[»] chr2 (4 HSPs)
chr2 (31-319)||(23348413-23348697)
chr2 (35-319)||(12742092-12742372)
chr2 (35-319)||(18354744-18355030)
chr2 (30-179)||(10328457-10328606)
[»] chr5 (4 HSPs)
chr5 (35-319)||(7472922-7473206)
chr5 (35-319)||(9044206-9044486)
chr5 (35-319)||(30441983-30442263)
chr5 (69-151)||(40163917-40163996)
[»] chr7 (3 HSPs)
chr7 (35-319)||(43070819-43071099)
chr7 (211-319)||(1262493-1262601)
chr7 (211-319)||(48849391-48849499)
[»] scaffold0596 (1 HSPs)
scaffold0596 (30-319)||(1058-1343)
[»] chr3 (7 HSPs)
chr3 (30-319)||(53972718-53973003)
chr3 (31-319)||(19881544-19881828)
chr3 (30-179)||(37982948-37983097)
chr3 (194-319)||(37982756-37982881)
chr3 (211-301)||(31685485-31685575)
chr3 (233-278)||(17682201-17682246)
chr3 (233-278)||(19766443-19766488)
[»] chr8 (3 HSPs)
chr8 (210-319)||(14677630-14677739)
chr8 (210-309)||(31100480-31100579)
chr8 (211-304)||(5658175-5658268)
[»] chr4 (1 HSPs)
chr4 (210-317)||(29862969-29863076)
[»] chr6 (3 HSPs)
chr6 (210-304)||(33045054-33045148)
chr6 (210-287)||(10092908-10092985)
chr6 (277-319)||(22000988-22001030)
[»] scaffold0045 (1 HSPs)
scaffold0045 (210-315)||(11242-11347)
[»] scaffold0035 (1 HSPs)
scaffold0035 (210-319)||(35465-35574)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 31 - 319
Target Start/End: Original strand, 23348413 - 23348697
Alignment:
Q  31 acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 130  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348413 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 23348512  T
Q  131 gtaatggaataacaaagttagggaaaagttacaggaacagcgatttaggnnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgca 230  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||||||||||| |||||||||    
T  23348513 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttagg----atatatatagtagcatcttcaacacacctggctgatacgatgccgca 23348608  T
Q  231 gacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  23348609 gacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 23348697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 319
Target Start/End: Complemental strand, 12742372 - 12742092
Alignment:
Q  35 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 134  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12742372 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 12742273  T
Q  135 tggaataacaaagttagggaaaagttacaggaacagcgatttaggnnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgcagacg 234  Q
    ||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||| ||||||| |||||||||||||    
T  12742272 tggaataacaaagttagggaaaagttacaggaacaacgatttagg----atatatatagtagcatcttcaacacaccttgctgatacgatgccgcagacg 12742177  T
Q  235 acaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  12742176 acaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcggcggagagagcggcaac 12742092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 35 - 319
Target Start/End: Original strand, 18354744 - 18355030
Alignment:
Q  35 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 134  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18354744 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 18354843  T
Q  135 tggaataacaaagttagggaaaagttacaggaacagcgatttagg--nnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgcaga 232  Q
    |||||||||||||||||||||||| |||||||||| |||||||||               ||||||||||||||||||||| |||||| || ||||||||    
T  18354844 tggaataacaaagttagggaaaagctacaggaacaacgatttaggatatatatatatatagtagcatcttcaacacacctgactgatacgacgccgcaga 18354943  T
Q  233 cgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  18354944 caacaacagcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 18355030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 10328457 - 10328606
Alignment:
Q  30 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 129  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10328457 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 10328556  T
Q  130 tgtaatggaataacaaagttagggaaaagttacaggaacagcgatttagg 179  Q
    ||||||||||||||||||||||||||||| |||| ||||| |||||||||    
T  10328557 tgtaatggaataacaaagttagggaaaagatacatgaacaacgatttagg 10328606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 35 - 319
Target Start/End: Original strand, 7472922 - 7473206
Alignment:
Q  35 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 134  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7472922 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 7473021  T
Q  135 tggaataacaaagttagggaaaagttacaggaacagcgatttaggnnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgcagacg 234  Q
    ||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||||||||||| |||||||||||||    
T  7473022 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg 7473121  T
Q  235 acaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  7473122 acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcgacaac 7473206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 35 - 319
Target Start/End: Complemental strand, 9044486 - 9044206
Alignment:
Q  35 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 134  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9044486 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 9044387  T
Q  135 tggaataacaaagttagggaaaagttacaggaacagcgatttaggnnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgcagacg 234  Q
    ||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||| ||||||||| ||||| |||||||    
T  9044386 tggaataacaaagttagggaaaagttacaggaacaacgatttagg----atatatatagtagcatcttcaacacacttggctgatacgatgctgcagacg 9044291  T
Q  235 acaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  9044290 acaacgacgaaggtgatgtcgaaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 9044206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 35 - 319
Target Start/End: Original strand, 30441983 - 30442263
Alignment:
Q  35 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 134  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30441983 atgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 30442082  T
Q  135 tggaataacaaagttagggaaaagttacaggaacagcgatttaggnnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgcagacg 234  Q
    ||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||  ||||||||| |||||||||||||    
T  30442083 tggaataacaaagttagggaaaagttacaggaacaacgatttagg----atatatatagtagcatcttcaacacatatggctgatacgatgccgcagacg 30442178  T
Q  235 acaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  30442179 acaacggccaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcaacggagagagcggcaac 30442263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
Q  69 ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttag 151  Q
    ||||||||| || ||||||||||| |||||||||   |||||| | ||||||||| ||| || ||||||||||||||||||||    
T  40163996 ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag 40163917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 35 - 319
Target Start/End: Original strand, 43070819 - 43071099
Alignment:
Q  35 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 134  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43070819 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 43070918  T
Q  135 tggaataacaaagttagggaaaagttacaggaacagcgatttaggnnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgcagacg 234  Q
    ||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||||||||||| |||||||||||||    
T  43070919 tggaataacaaagttagggaaaagttacaggaacaacgatttagg----atatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg 43071014  T
Q  235 acaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  43071015 acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 43071099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 1262601 - 1262493
Alignment:
Q  211 ctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaa 310  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1262601 ctggctgatacgatgccgcatacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagaa 1262502  T
Q  311 agcggcaac 319  Q
    |||||||||    
T  1262501 agcggcaac 1262493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 48849391 - 48849499
Alignment:
Q  211 ctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaa 310  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  48849391 ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgaaaggagagagctgcggcgacggagaa 48849490  T
Q  311 agcggcaac 319  Q
    |||||||||    
T  48849491 agcggcaac 48849499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 1343 - 1058
Alignment:
Q  30 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 129  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1343 tacacatgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 1244  T
Q  130 tgtaatggaataacaaagttagggaaaagttacaggaacagcgatttaggnnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgc 229  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||||||||||| ||||||||    
T  1243 tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttagg----atatatatagtagcatcttcaacacacctggctgatacgatgccgc 1148  T
Q  230 agacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1147 agacgacaacggcgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 319
Target Start/End: Original strand, 53972718 - 53973003
Alignment:
Q  30 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 129  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53972718 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 53972817  T
Q  130 tgtaatggaataacaaagttagggaaaagttacaggaacagcgatttaggnnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgc 229  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||| ||||||||| ||||||||    
T  53972818 tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttagg----atatatatagtagcatcttcaacacacttggctgatacgatgccgc 53972913  T
Q  230 agacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  53972914 agacgacaacgacgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 53973003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 31 - 319
Target Start/End: Original strand, 19881544 - 19881828
Alignment:
Q  31 acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 130  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19881544 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 19881643  T
Q  131 gtaatggaataacaaagttagggaaaagttacaggaacagcgatttaggnnnnnnnnnnnnngtagcatcttcaacacacctggctgatatgatgccgca 230  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||||||||||| |||||||||    
T  19881644 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttagg----atatatatagtagcatcttcaacacacctggctgatacgatgccgca 19881739  T
Q  231 gacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| ||| |||| |||||||||    
T  19881740 gacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgaggacaggagagagctgcggtgacggagagagcggcaac 19881828  T

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Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 37983097 - 37982948
Alignment:
Q  30 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 129  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37983097 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 37982998  T
Q  130 tgtaatggaataacaaagttagggaaaagttacaggaacagcgatttagg 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37982997 tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttagg 37982948  T

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Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 37982881 - 37982756
Alignment:
Q  194 tagcatcttcaacacacctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagaga 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  37982881 tagcatcttcaacacacctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgataggagaga 37982782  T
Q  294 gctgcggcgacagagaaagcggcaac 319  Q
    ||||||||||| |||| |||||||||    
T  37982781 gctgcggcgacggagagagcggcaac 37982756  T

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Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 31685575 - 31685485
Alignment:
Q  211 ctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggc 301  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  31685575 ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgatatcattggtgaagggcgacgacaggagagagctgcggc 31685485  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 17682246 - 17682201
Alignment:
Q  233 cgacaacggcgaaggtgaagtcggaatcgagagcattggtgaaggg 278  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||    
T  17682246 cgacaacggcaaaggtgatgtcggaatcgagagcattggtgaaggg 17682201  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 19766488 - 19766443
Alignment:
Q  233 cgacaacggcgaaggtgaagtcggaatcgagagcattggtgaaggg 278  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  19766488 cgacaacggcgaaggtgatgtcggaatctagagcattggtgaaggg 19766443  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 319
Target Start/End: Original strand, 14677630 - 14677739
Alignment:
Q  210 cctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 309  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  14677630 cctggctgatacgatgctgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgacgataggagagagctgcggcgacggaga 14677729  T
Q  310 aagcggcaac 319  Q
     |||||||||    
T  14677730 gagcggcaac 14677739  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 31100480 - 31100579
Alignment:
Q  210 cctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 309  Q
    ||||| ||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  31100480 cctggatgatacgatgccacagacgacaacggcgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagttgcggcgacggaga 31100579  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 5658268 - 5658175
Alignment:
Q  211 ctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 304  Q
    |||| ||||| |||||| |||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5658268 ctggatgatacgatgccacagacgacaacggcgaaggtgatgttggaatcaagagcattggtgaagggcgacgacaggagagagctgcggcgac 5658175  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 29862969 - 29863076
Alignment:
Q  210 cctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 309  Q
    ||||||||||| ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  29862969 cctggctgatacgatgccgcagatgacaacggcaaaagtgatgtcggaatcgagagcatcggtgaagggcgacgacaggagagagctgcggcgacggaga 29863068  T
Q  310 aagcggca 317  Q
     |||||||    
T  29863069 gagcggca 29863076  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 33045054 - 33045148
Alignment:
Q  210 cctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 304  Q
    ||||| ||||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33045054 cctggatgatacgatgccgcagacgacaacgacgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 33045148  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 10092985 - 10092908
Alignment:
Q  210 cctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacag 287  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  10092985 cctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacag 10092908  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 22000988 - 22001030
Alignment:
Q  277 ggcgacgacaggagagagctgcggcgacagagaaagcggcaac 319  Q
    |||||||||||||||||||||||||||| |||| |||||||||    
T  22000988 ggcgacgacaggagagagctgcggcgacggagagagcggcaac 22001030  T

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Target: scaffold0045 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 210 - 315
Target Start/End: Original strand, 11242 - 11347
Alignment:
Q  210 cctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 309  Q
    ||||||||||   |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  11242 cctggctgatgcaatgccgcagacgacaacggcgaaggtgatgtcggattcgagagcattggtgaagggcgacgacaagagagagctgcggcgacggaga 11341  T
Q  310 aagcgg 315  Q
     |||||    
T  11342 gagcgg 11347  T

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Target: scaffold0035 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 319
Target Start/End: Complemental strand, 35574 - 35465
Alignment:
Q  210 cctggctgatatgatgccgcagacgacaacggcgaaggtgaagtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 309  Q
    ||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||| ||| || |||||||||||||||||||||||||||| ||||    
T  35574 cctggctgatacgatgccgcaaacgacaacggcgaaggtgatgtcagaatcgagagcatcggtcaaaggcgacgacaggagagagctgcggcgacggaga 35475  T
Q  310 aagcggcaac 319  Q
     ||| |||||    
T  35474 gagcagcaac 35465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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