View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20325_high_1 (Length: 371)
Name: NF20325_high_1
Description: NF20325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20325_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 3 - 353
Target Start/End: Original strand, 13138726 - 13139075
Alignment:
| Q |
3 |
attttaatccttattgtgcatcaatgaaactatgatcaaataacacaaatgttttctaaaatcattttacacagttttatttttgttgttagaactagac |
102 |
Q |
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| T |
13138726 |
attttaatccttattgtgcatcaatgaaactatgatcaaataacacaaatgttttctaaaatcattttacacagttttatttttgttgttagaactagac |
13138825 |
T |
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| Q |
103 |
aacnnnnnnnngtcacaaaatacatctttcattggcatgaacatgatgtatgaaacattgaggtcaacatgtattcttttaaacgtatatgatcattcta |
202 |
Q |
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| T |
13138826 |
aacttttttt-gtcacaaaatacatctttcattggcatgaacatgatgtattaaacattgaggtcatcatgtattcttttaaacgtatatgatcattcta |
13138924 |
T |
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| Q |
203 |
tcaatcattttttaattgtattaattaataaaactttcagtctcaacctccttaattgaggccttttttgtttattaaaactaatgtcaannnnnnnnat |
302 |
Q |
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| T |
13138925 |
tcaatcattttttaattgtattaattaataaaactttcagtctcaacctccttaattgaggccttttttgtttattaaaactaatgtcaattttttttat |
13139024 |
T |
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| Q |
303 |
cggtgacctaataaaagtagagctttagcagattttattgaggtccttatc |
353 |
Q |
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| T |
13139025 |
cggtgacctaataaaagtagagctttagcagattttattgaggtccttatc |
13139075 |
T |
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