View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20325_high_5 (Length: 228)

Name: NF20325_high_5
Description: NF20325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20325_high_5
NF20325_high_5
[»] chr7 (1 HSPs)
chr7 (1-213)||(30715696-30715908)
[»] chr3 (3 HSPs)
chr3 (122-213)||(19985278-19985369)
chr3 (1-76)||(19985369-19985444)
chr3 (1-76)||(31646745-31646820)
[»] chr1 (4 HSPs)
chr1 (1-76)||(39152450-39152525)
chr1 (1-76)||(45156730-45156805)
chr1 (122-213)||(39152359-39152450)
chr1 (122-213)||(45156805-45156896)
[»] chr5 (2 HSPs)
chr5 (10-76)||(5962063-5962129)
chr5 (122-162)||(5962129-5962169)
[»] chr2 (2 HSPs)
chr2 (1-76)||(802089-802164)
chr2 (124-185)||(802166-802227)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 30715908 - 30715696
Alignment:
Q  1 cctaaacagattcgagaatttccaaaacttgctcaaacgcttcttcaatgacctggagttggaattcacgttacaatcccctgcgtaaaacgtcggacct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715908 cctaaacagattcgagaatttccaaaacttgctcaaacgcttcttcaacgacctggagttggaattcacgttacaatcccctgcgtaaaacgtcggacct 30715809  T
Q  101 aactgcggagtgctgtaaaacagtctttcacgacggtctccaacggtggggtaatcagatttacggcgagagacgtaaggtgaaacagagcgtggaaata 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715808 aactgcggagtgctgtaaaacagtctttcacgacgatctccaacggtggggtaatcagatttacggcgagagacgtaaggtgaaacagagcgtggaaata 30715709  T
Q  201 ttaacggtggtgg 213  Q
    |||||||||||||    
T  30715708 ttaacggtggtgg 30715696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 19985369 - 19985278
Alignment:
Q  122 agtctttcacgacggtctccaacggtggggtaatcagatttacggcgagagacgtaaggtgaaacagagcgtggaaatattaacggtggtgg 213  Q
    |||||||||| ||||||||| |||| ||  ||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||    
T  19985369 agtctttcacaacggtctccgacggcggcataatcagatttgcggcgagagacgtaaggtgaaacagagagcggaaatatcaacggtggtgg 19985278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19985444 - 19985369
Alignment:
Q  1 cctaaacagattcgagaatttccaaaacttgctcaaacgcttcttcaatgacctggagttggaattcacgttacaa 76  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  19985444 cctatacagatttgagaatttccaaaacttgctcaaacgcttcttcaacgacctggagttagaattcaggttacaa 19985369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31646820 - 31646745
Alignment:
Q  1 cctaaacagattcgagaatttccaaaacttgctcaaacgcttcttcaatgacctggagttggaattcacgttacaa 76  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  31646820 cctatacaaattcgagaatttccaaaacttgctcaaacgcttcttcaacgacctggagttagaattcaggttacaa 31646745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39152525 - 39152450
Alignment:
Q  1 cctaaacagattcgagaatttccaaaacttgctcaaacgcttcttcaatgacctggagttggaattcacgttacaa 76  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  39152525 cctatacagatttgagaatttccaaaacttgctcaaacgcttcttcaacgacctggagttagaattcaggttacaa 39152450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 45156730 - 45156805
Alignment:
Q  1 cctaaacagattcgagaatttccaaaacttgctcaaacgcttcttcaatgacctggagttggaattcacgttacaa 76  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  45156730 cctatacagatttgagaatttccaaaacttgctcaaacgcttcttcaacgacctggagttagaattcaggttacaa 45156805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 39152450 - 39152359
Alignment:
Q  122 agtctttcacgacggtctccaacggtggggtaatcagatttacggcgagagacgtaaggtgaaacagagcgtggaaatattaacggtggtgg 213  Q
    |||||||||| ||||||||| |||| ||  ||||||||||| ||||||||||||||||||||||| ||| | |||||||| |||||||||||    
T  39152450 agtctttcacaacggtctccgacggcggcataatcagatttgcggcgagagacgtaaggtgaaacggagagcggaaatatcaacggtggtgg 39152359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 45156805 - 45156896
Alignment:
Q  122 agtctttcacgacggtctccaacggtggggtaatcagatttacggcgagagacgtaaggtgaaacagagcgtggaaatattaacggtggtgg 213  Q
    |||||||||| ||||||||| |||| ||  ||||||||||| ||||||||||||||||||||||| ||| | |||||||| |||||||||||    
T  45156805 agtctttcacaacggtctccgacggcggcataatcagatttgcggcgagagacgtaaggtgaaacggagagcggaaatatcaacggtggtgg 45156896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 5962063 - 5962129
Alignment:
Q  10 attcgagaatttccaaaacttgctcaaacgcttcttcaatgacctggagttggaattcacgttacaa 76  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  5962063 attcgagaatttccaaaacttgctcaaacgcttcttcaacgacctggagttagaattcaggttacaa 5962129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 5962129 - 5962169
Alignment:
Q  122 agtctttcacgacggtctccaacggtggggtaatcagattt 162  Q
    ||||||||| |||||||||| ||||||| ||||||||||||    
T  5962129 agtctttcatgacggtctccgacggtggcgtaatcagattt 5962169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 802089 - 802164
Alignment:
Q  1 cctaaacagattcgagaatttccaaaacttgctcaaacgcttcttcaatgacctggagttggaattcacgttacaa 76  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||| | ||||||||||| ||||||| |||||||    
T  802089 cctatacagatttgagaattttcaaaacttgctcaaacgcttcttcgacgacctggagttagaattcaggttacaa 802164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 802166 - 802227
Alignment:
Q  124 tctttcacgacggtctccaacggtggggtaatcagatttacggcgagagacgtaaggtgaaa 185  Q
    |||||||||||||||||| |||| || ||||||||||||  |||||||||||||||||||||    
T  802166 tctttcacgacggtctccgacggcggcgtaatcagatttgtggcgagagacgtaaggtgaaa 802227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University