View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20325_high_7 (Length: 209)

Name: NF20325_high_7

Description: NF20325

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20325_high_7

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 151; E-Value: 4e-80

Query Start/End: Original strand, 21 - 195

Target Start/End: Original strand, 4739263 - 4739437

Alignment:

Q	21	attaacatcaaaaaatcagataactactaggtagaagcgccacccctaccactcgtacacctttgacgataagtcatctcaccctgagcctctttcaaaa	120	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4739263	attaacatcagaaaatcagataactactaggtagaagcaccacccctaccactcgtacacctttgacggtaagtcatctcaccctgagcctctttcaaaa	4739362	T

Q	121	tcaaatccaaactaagctaagtcggacttccctgctccatctgaccactgaccatgatagttttggtagtctctg	195	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|
T	4739363	tcaaatccaaactaagctaagttggacttccctgctccatctgaccactgaccatgatagttctggaagtctctg	4739437	T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 125 - 182

Target Start/End: Original strand, 26235808 - 26235865

Alignment:

Q	125	atccaaactaagctaagtcggacttccctgctccatctgaccactgaccatgatagtt	182	Q
		\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26235808	atccaaactaatccaagcctcacttccctactccacctgaccactgaccatgatagtt	26235865	T

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