View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20325_low_1 (Length: 460)
Name: NF20325_low_1
Description: NF20325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20325_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 28281551 - 28281990
Alignment:
| Q |
18 |
gatattgtgatcattctttaaagaatcttgtccataacatttcacatttattttatgcaaaaagagtgatttcctaataaaatatactaaaatgatggat |
117 |
Q |
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| T |
28281551 |
gatattgtgatcattctttaaagaatcttgtccataacatttcacatttgttttatgcaaaaagagtgatttcctaataaaatatactaaaatgacggat |
28281650 |
T |
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| Q |
118 |
ttcagatttgtggattagtcattcgtaattaaagcatacagggttagtgaatacattgtggaccgatatgtatttttctgttattcacaaatttgtgtag |
217 |
Q |
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| T |
28281651 |
ttcagatttgtggattagtcattcgtaattaaagcatacagggttagtgaatacattgtggaccaatatgtatttttctgttattcacaaatttgtgtag |
28281750 |
T |
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| Q |
218 |
atggtttaacatagtattagtagattttgtttttcaaaaactattctctgaccacaactttaacttaatttcagggcgttctcttgctgaatgctgttct |
317 |
Q |
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| T |
28281751 |
atggtttaacatagtattagtagattttgtttttcaaaaactattctctgaccacaactttaacttaatttcagggcgttctcttgctgaatgctgttct |
28281850 |
T |
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| Q |
318 |
cacaggttagatattttacatttttgtgaacttttaatcaatagtattggtgacttaaagtcataaactatttgtgcatgatgatctagtatgaaaatta |
417 |
Q |
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| T |
28281851 |
cacaggttagatattttacatttttgtgaacttttaatcaatagtattggtgacttaaagtcataaactatttgtgcatgatgatctagtatgaaaatta |
28281950 |
T |
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| Q |
418 |
cccttactatgtttggtgtattatgtttgtatactagtat |
457 |
Q |
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| T |
28281951 |
cccttactatgtttggtgtattatgtttgtatactagtat |
28281990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 28290039 - 28290174
Alignment:
| Q |
241 |
attttgtttttcaaaaactattctctgaccacaactttaacttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacattt |
340 |
Q |
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| T |
28290039 |
attttgtttttcaaaaactattctctgatcacagctttga-ttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacattt |
28290137 |
T |
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| Q |
341 |
ttgtgaacttttaatcaatagtattggtgacttaaag |
377 |
Q |
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| T |
28290138 |
ttgtgaacttctaatcaagagtgttggtgacttaaag |
28290174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 28302890 - 28302949
Alignment:
| Q |
282 |
ttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacattttt |
342 |
Q |
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| T |
28302890 |
ttaatttcagggcgttctcttactgaatgctgttctcacaggttagata-tttacattttt |
28302949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 457
Target Start/End: Original strand, 28290201 - 28290265
Alignment:
| Q |
391 |
gtgcatgatgatctagtatgaaaattacccttactatgtttggtgtattatgtttgtatactagtat |
457 |
Q |
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| T |
28290201 |
gtgcatggtgatctagtatgta--tgaccctcaccatgtttggtgtattatgtttgtatactagtat |
28290265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 28302980 - 28303020
Alignment:
| Q |
417 |
acccttactatgtttggtgtattatgtttgtatactagtat |
457 |
Q |
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| T |
28302980 |
accctgactatgtttggtgtattatgcttgtatactagtat |
28303020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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