View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20325_low_3 (Length: 366)
Name: NF20325_low_3
Description: NF20325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20325_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 9938375 - 9938026
Alignment:
| Q |
18 |
ataggacctttgtatcaaaccatgattcaataatgagaatacacttttacataacacaacactcgctccagcagatatcgaa-cctatgaggtctatatc |
116 |
Q |
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| T |
9938375 |
ataggagctttgtatcaaaccataattcaataatgagaatacacttttacataacacaacactcgctccagcagatatcgaaacctatgaggtccatatc |
9938276 |
T |
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| Q |
117 |
tgattcagtttgagtataagctaatgttctgaaatgagcatgtttgacggtgatcatcgaactggtaatttctgagtgttacttatatatatttcagatt |
216 |
Q |
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| T |
9938275 |
tgattcagtctgagtataagctaatgttctgaaatgagcatgtttgacggtgatcatcgaactggtaatttctgagtgttacttatacatatttcagatt |
9938176 |
T |
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| Q |
217 |
tataatatgaaacatgttacttttgtttggactattttaaaattcaaaaagttttgaaacggaaattacaataatttaatgtcaaaacacatggactttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9938175 |
tataatatgaaacatgttacttttgtttggactattttaaaattcaaaaagttttgaaacggaaattacaataatttaatgtcaaaacacatggactttg |
9938076 |
T |
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| Q |
317 |
agtttttaaatattccgattataaatccacttgggttggcctaatggtat |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9938075 |
agtttttaaatattccgattataaatccacttgggttggtctaatggtat |
9938026 |
T |
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