View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20326_high_11 (Length: 307)
Name: NF20326_high_11
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20326_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 53957365 - 53957055
Alignment:
| Q |
1 |
tcagtgtaattatatgtgtcggtgggacacgtctaatccaatgagtgttcgtggttcatagttttggggtatta--------------------tatata |
80 |
Q |
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| T |
53957365 |
tcagtgtaattatatttgtcggtgggacacgtctaatccaatgagtgtctgtggttcatagttttggggtattacatatatatatatatatatatatata |
53957266 |
T |
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| Q |
81 |
tgctagaattagcaaaagatttacagtcataacatgacccccc-----accaataaaaaataaactttttatgtcaattattttttaaaatttaatatgg |
175 |
Q |
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| T |
53957265 |
tgctagaattagcaaaagatttacagtcataacatgacccccccccccaccaataaaaaataaactttttatgtcaattatttttttaaatttaatatgg |
53957166 |
T |
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| Q |
176 |
gtgaacaaaatctgttactgaacaaaaattgttggctaactgtagcattaaaaggagcagccacacttaaagtaagatcaggatcaaggaacagattgaa |
275 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957165 |
gtgaacaa--tctgttactgaacaaaaattgttggctaactgtagcattaaaaggagcagccacacttaaagtaagatcaggatcaaggaacagattgaa |
53957068 |
T |
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| Q |
276 |
tgggggagccccc |
288 |
Q |
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| T |
53957067 |
tgggggagccccc |
53957055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 17124216 - 17124276
Alignment:
| Q |
3 |
agtgtaattatatgtgtcggtg--ggacacgtctaatccaatgagtgttcgtggttcatag |
61 |
Q |
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| T |
17124216 |
agtgtaattatatgtatcggtgtcgaacacgtctaatccgatgagtgtccgtggttcatag |
17124276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34691831 - 34691770
Alignment:
| Q |
1 |
tcagtgtaattatatgtgtcggtg--ggacacgtctaatccaatgagtgttcgtggttcata |
60 |
Q |
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| T |
34691831 |
tcagtgtaattatatgtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata |
34691770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34714243 - 34714182
Alignment:
| Q |
1 |
tcagtgtaattatatgtgtcggtg--ggacacgtctaatccaatgagtgttcgtggttcata |
60 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| | |||||| |||| |||||| |
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| T |
34714243 |
tcagtgtaattatatgtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata |
34714182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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