View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20326_high_12 (Length: 304)
Name: NF20326_high_12
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20326_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 42 - 290
Target Start/End: Original strand, 6820241 - 6820489
Alignment:
| Q |
42 |
cttttcaagatgaatgtattaatgatatatatgcctagcaagttttgtgattgaagagcttaattagtactcatatatagagagaaaactagtcactttg |
141 |
Q |
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| T |
6820241 |
cttttcaagatgaatgtattaatgatatatatgcctagcaagttttgtgattgaagagcttaattagttctcatatatagagagaaaactagtcactttg |
6820340 |
T |
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| Q |
142 |
catattattttattgtttccatattcacaaaagaatgtgttgaagtaagcttgtcggaagtaaaaagaatgtgtaaggattaactcactctaaagggtaa |
241 |
Q |
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| T |
6820341 |
catattattttattgtttccatattcacaaaagaatgtgttgaagtaagcttgtcggaagtaaaaagaatgtgtaaggattaactcactctaaagggtaa |
6820440 |
T |
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| Q |
242 |
attaaataagtaatctaattatttggtaaataaatcggtcgttgatatt |
290 |
Q |
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| T |
6820441 |
attaaataagtaatctaaatatttggtaaataaatcggtagttgatatt |
6820489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 290
Target Start/End: Original strand, 6834766 - 6834945
Alignment:
| Q |
106 |
tagtactcatatatagagagaaaactagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagcttgtcggaagtaaa |
205 |
Q |
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| T |
6834766 |
tagtacttatatatagagacaaaactagtcactttgcttattattttattgtttcc--attcacaaaagtatatgttgaagtaaacttggaggaagtaaa |
6834863 |
T |
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| Q |
206 |
aagaatgtgtaaggatt-aactcactctaaagggtaaattaaataagtaatctaattatttggtaaataaatcggtcgttgatatt |
290 |
Q |
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| T |
6834864 |
aagaatatgtaaggattaaattcactttaaagggta----aaataagtaatataagtatttgacaaataaatctgtaggtgatatt |
6834945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 6813788 - 6813881
Alignment:
| Q |
131 |
tagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagcttgtcggaagtaaaaagaatgtgtaaggattaa |
224 |
Q |
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| T |
6813788 |
tagtcactatgaatactattctattgtttccatattcacaaatttatgctttgatgtaagcttggaggaagtaagaagggtatgtaaggattaa |
6813881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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