View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20326_high_3 (Length: 669)

Name: NF20326_high_3
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20326_high_3
NF20326_high_3
[»] chr3 (2 HSPs)
chr3 (18-660)||(36743611-36744258)
chr3 (391-423)||(35722340-35722372)
[»] chr8 (12 HSPs)
chr8 (329-428)||(6392095-6392194)
chr8 (293-428)||(6364472-6364607)
chr8 (293-428)||(7460671-7460806)
chr8 (293-425)||(6290510-6290642)
chr8 (293-428)||(6353599-6353734)
chr8 (342-428)||(6411259-6411345)
chr8 (352-428)||(6264930-6265006)
chr8 (352-428)||(6425289-6425365)
chr8 (352-428)||(6275755-6275831)
chr8 (313-428)||(6333183-6333298)
chr8 (313-428)||(6371303-6371418)
chr8 (400-438)||(6458252-6458290)
[»] chr2 (1 HSPs)
chr2 (354-434)||(42694385-42694465)
[»] chr1 (1 HSPs)
chr1 (415-537)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 18 - 660
Target Start/End: Original strand, 36743611 - 36744258
Alignment:
Q  18 ctaccttgtcagtttaactcttgaagacatacctggtcatgattccattacatttctttgcaactcatgggtttacaatgctaaacaatatcgcaaggac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743611 ctaccttgtcagtttaactcttgaagacatacctggtcatgattccattacatttctttgcaactcatgggtttacaatgctaaacaatatcgcaaggac 36743710  T
Q  118 cgaattttctttgccaataaggtaccaaacaactttaactttactatttttaacttcggtatcaaaataacttttaagctcnnnnnnngttgggccaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       || |||||||||    
T  36743711 cgaattttctttgccaataaggtaccaaacaactttaactttattatttttaacttcggtatcaaaataacttttaagctcaaaaaaagtcgggccaaac 36743810  T
Q  218 acaccctatgtttagttaatatgtgtcgcgatgattgaaagaatagtcatgttatgtaattatttatgttgcagccataccttccacatgaaatgccagc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743811 acaccctatgtttagttaatatgtgtcgcgatgattgaaagaatagtcatgttatgtaattatttatgttgcagccataccttccacatgaaatgccagc 36743910  T
Q  318 tccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743911 tccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttac 36744010  T
Q  418 aatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgcagaa 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36744011 aatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgtaggggaagaacctgcagaa 36744110  T
Q  518 aaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctcaact-----ttttcttagtaatatataattgaaactttttacta 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  36744111 aaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctcaactttttcttttcttagtaatatataattgaaactttttacta 36744210  T
Q  613 atgaatatatattatttatatgatgattcattaattcacaggttctgc 660  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||    
T  36744211 atgaatatatattatttatatgatgattcattaatttacagattctgc 36744258  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
Q  391 gacagaatctatgattatgatgtttacaatgat 423  Q
    ||||||||||||||||||||||| |||||||||    
T  35722340 gacagaatctatgattatgatgtctacaatgat 35722372  T

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Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 329 - 428
Target Start/End: Complemental strand, 6392194 - 6392095
Alignment:
Q  329 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 428  Q
    |||||||||| | ||||||| |||||||||| ||||||||||| | | ||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  6392194 actacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg 6392095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 293 - 428
Target Start/End: Complemental strand, 6364607 - 6364472
Alignment:
Q  293 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 392  Q
    |||||||||||  |||||  ||||||||  ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| ||||||||||    
T  6364607 cataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga 6364508  T
Q  393 cagaatctatgattatgatgtttacaatgatttggg 428  Q
     ||||| |||||||||||||| ||||||||||||||    
T  6364507 aagaatatatgattatgatgtctacaatgatttggg 6364472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 293 - 428
Target Start/End: Complemental strand, 7460806 - 7460671
Alignment:
Q  293 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 392  Q
    |||||||||||  || ||  ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  7460806 cataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatggga 7460707  T
Q  393 cagaatctatgattatgatgtttacaatgatttggg 428  Q
    |||||| |||||||||||||| |||||||| |||||    
T  7460706 cagaatatatgattatgatgtctacaatgacttggg 7460671  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 293 - 425
Target Start/End: Complemental strand, 6290642 - 6290510
Alignment:
Q  293 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 392  Q
    |||||||||||  |||||  ||||||||| ||||  |||| ||||| | ||||||| | |||||||| ||||||||||||| | ||||  ||||||||||    
T  6290642 cataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatggga 6290543  T
Q  393 cagaatctatgattatgatgtttacaatgattt 425  Q
     ||||| |||||||| ||||| |||||||||||    
T  6290542 aagaatatatgattacgatgtctacaatgattt 6290510  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 293 - 428
Target Start/End: Complemental strand, 6353734 - 6353599
Alignment:
Q  293 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 392  Q
    |||||||||||  |||||  || |||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  6353734 cataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga 6353635  T
Q  393 cagaatctatgattatgatgtttacaatgatttggg 428  Q
     ||||| |||||||| ||||| ||||||||||||||    
T  6353634 aagaatatatgattacgatgtctacaatgatttggg 6353599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 6411345 - 6411259
Alignment:
Q  342 agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 428  Q
    ||||||| | |||||||| ||||||||||| | | ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  6411345 agaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg 6411259  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 6265006 - 6264930
Alignment:
Q  352 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 428  Q
    |||||||| ||||||||||| |   ||||  | |||||||||||| | |||||||||||||||||||||||||||||    
T  6265006 actttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg 6264930  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 6425365 - 6425289
Alignment:
Q  352 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 428  Q
    |||||||| |||||||||| || | ||||  |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  6425365 actttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 6275831 - 6275755
Alignment:
Q  352 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 428  Q
    |||||||| ||||||||||||| | ||||| | |||||||| || |||||||| || ||||| ||||||||| ||||    
T  6275831 actttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtggg 6275755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 6333298 - 6333183
Alignment:
Q  313 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 412  Q
    ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| |   ||||  | |||| ||| || |||||||| || ||||    
T  6333298 ccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatg 6333199  T
Q  413 tttacaatgatttggg 428  Q
    |||||||||| |||||    
T  6333198 tttacaatgacttggg 6333183  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 6371418 - 6371303
Alignment:
Q  313 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 412  Q
    ||||||||| ||||  |||||||||| | ||| ||| | |||||||| ||||||||||| |   ||||  | |||||||| || |||||||| || ||||    
T  6371418 ccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatg 6371319  T
Q  413 tttacaatgatttggg 428  Q
    | ||||||||||||||    
T  6371318 tctacaatgatttggg 6371303  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
Q  400 tatgattatgatgtttacaatgatttgggaaatccagat 438  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6458290 tatgattatgatatttataatgatttgggaaatccagat 6458252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 354 - 434
Target Start/End: Complemental strand, 42694465 - 42694385
Alignment:
Q  354 tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 434  Q
    |||||| ||||||||||||| | | ||  | |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  42694465 tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc 42694385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 537
Target Start/End: Original strand, 36923579 - 36923701
Alignment:
Q  415 tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgca 514  Q
    |||||||||||||||||||| |||||  |||  || | | ||||||| ||||| ||||| ||| || ||| ||| || |||||||||||||||||  |||    
T  36923579 tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca 36923678  T
Q  515 gaaaaccgaccaaaacaggttag 537  Q
    || ||||  ||||| ||||||||    
T  36923679 gagaacctgccaaatcaggttag 36923701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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