View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20326_high_7 (Length: 440)

Name: NF20326_high_7
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20326_high_7
NF20326_high_7
[»] chr4 (12 HSPs)
chr4 (1-423)||(19093605-19094017)
chr4 (1-214)||(5680235-5680446)
chr4 (4-217)||(22350756-22350970)
chr4 (1-216)||(19927377-19927592)
chr4 (81-254)||(20828643-20828817)
chr4 (1-270)||(17277144-17277402)
chr4 (284-420)||(5685270-5685406)
chr4 (5-41)||(9264066-9264102)
chr4 (86-217)||(19562587-19562718)
chr4 (1-40)||(10782886-10782925)
chr4 (129-207)||(12838707-12838784)
chr4 (1-45)||(11252843-11252887)
[»] chr7 (20 HSPs)
chr7 (1-270)||(18202009-18202275)
chr7 (2-292)||(4987546-4987837)
chr7 (2-292)||(4991644-4991935)
chr7 (2-277)||(3735633-3735907)
chr7 (5-184)||(8310378-8310555)
chr7 (1-217)||(3189936-3190152)
chr7 (2-72)||(6014540-6014610)
chr7 (1-69)||(1588531-1588599)
chr7 (282-394)||(18201856-18201967)
chr7 (4-217)||(19154257-19154469)
chr7 (4-217)||(20753656-20753868)
chr7 (5-277)||(10585719-10585991)
chr7 (81-217)||(1585652-1585789)
chr7 (1-61)||(15870648-15870708)
chr7 (141-212)||(15171340-15171411)
chr7 (1-41)||(6040053-6040093)
chr7 (1-41)||(10938604-10938644)
chr7 (1-45)||(11804058-11804102)
chr7 (139-171)||(13288308-13288340)
chr7 (139-171)||(17190105-17190137)
[»] chr1 (23 HSPs)
chr1 (1-293)||(16112822-16113112)
chr1 (1-291)||(15572214-15572498)
chr1 (5-171)||(33191716-33191880)
chr1 (4-217)||(15527394-15527606)
chr1 (1-277)||(24282315-24282582)
chr1 (1-72)||(16360840-16360912)
chr1 (91-282)||(23035437-23035629)
chr1 (139-271)||(44796538-44796670)
chr1 (2-117)||(22665474-22665587)
chr1 (1-61)||(9786963-9787023)
chr1 (4-117)||(25960140-25960250)
chr1 (125-209)||(26647921-26648005)
chr1 (139-210)||(34482098-34482169)
chr1 (122-212)||(12011713-12011803)
chr1 (81-212)||(51469970-51470103)
chr1 (122-210)||(17120396-17120484)
chr1 (1-45)||(27116867-27116911)
chr1 (139-217)||(18100333-18100411)
chr1 (1-70)||(22621216-22621286)
chr1 (136-177)||(16786659-16786700)
chr1 (122-179)||(26021869-26021926)
chr1 (199-290)||(33191890-33191982)
chr1 (1-41)||(34481946-34481986)
[»] chr2 (20 HSPs)
chr2 (1-217)||(23010630-23010846)
chr2 (4-291)||(11464833-11465119)
chr2 (5-217)||(32086372-32086582)
chr2 (4-270)||(29032217-29032482)
chr2 (1-291)||(18552579-18552872)
chr2 (23-277)||(20173460-20173712)
chr2 (1-274)||(29834168-29834440)
chr2 (4-171)||(25883975-25884143)
chr2 (1-171)||(23006149-23006319)
chr2 (1-117)||(18459490-18459604)
chr2 (2-252)||(29850370-29850620)
chr2 (81-212)||(19199015-19199147)
chr2 (8-217)||(24381380-24381589)
chr2 (122-179)||(28766273-28766330)
chr2 (191-277)||(18459357-18459443)
chr2 (1-41)||(17891003-17891043)
chr2 (4-71)||(20175179-20175247)
chr2 (1-41)||(27419214-27419254)
chr2 (1-41)||(27420360-27420400)
chr2 (1-41)||(41789791-41789831)
[»] chr5 (16 HSPs)
chr5 (29-292)||(18513930-18514191)
chr5 (1-216)||(24264321-24264533)
chr5 (1-216)||(24340950-24341163)
chr5 (4-217)||(18831514-18831726)
chr5 (81-211)||(18938949-18939080)
chr5 (81-217)||(18206425-18206564)
chr5 (1-72)||(24266017-24266088)
chr5 (1-72)||(24342648-24342719)
chr5 (189-277)||(24264233-24264321)
chr5 (189-277)||(24340862-24340950)
chr5 (5-183)||(24661483-24661661)
chr5 (139-212)||(24162617-24162690)
chr5 (1-72)||(26121682-26121754)
chr5 (136-179)||(17470182-17470225)
chr5 (1-41)||(19762323-19762363)
chr5 (1-68)||(23266120-23266188)
[»] chr8 (10 HSPs)
chr8 (1-286)||(2638039-2638314)
chr8 (4-270)||(14271180-14271446)
chr8 (4-277)||(6886001-6886274)
chr8 (102-286)||(7984499-7984685)
chr8 (2-277)||(37527543-37527813)
chr8 (84-217)||(19787863-19787998)
chr8 (1-217)||(25181290-25181506)
chr8 (126-206)||(28275674-28275756)
chr8 (296-394)||(24091446-24091544)
chr8 (139-171)||(26139314-26139346)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-270)||(40616-40884)
[»] chr6 (13 HSPs)
chr6 (1-202)||(19245612-19245811)
chr6 (4-217)||(11177978-11178190)
chr6 (1-212)||(21687728-21687937)
chr6 (4-269)||(22569156-22569418)
chr6 (1-271)||(6629472-6629742)
chr6 (4-72)||(8245939-8246007)
chr6 (122-212)||(22565062-22565152)
chr6 (126-212)||(8038548-8038634)
chr6 (139-217)||(17388770-17388848)
chr6 (1-271)||(9898409-9898678)
chr6 (122-212)||(22783870-22783960)
chr6 (1-119)||(31879312-31879428)
chr6 (1-45)||(3357500-3357544)
[»] chr3 (17 HSPs)
chr3 (4-270)||(3115208-3115474)
chr3 (1-171)||(2722770-2722942)
chr3 (1-270)||(3429749-3430018)
chr3 (81-277)||(5509454-5509652)
chr3 (1-162)||(3386286-3386445)
chr3 (2-270)||(17205787-17206054)
chr3 (81-209)||(16222903-16223032)
chr3 (1-69)||(8267981-8268049)
chr3 (125-212)||(8144636-8144723)
chr3 (134-212)||(23698972-23699050)
chr3 (134-212)||(23717427-23717505)
chr3 (134-212)||(23735883-23735961)
chr3 (139-212)||(22470996-22471069)
chr3 (139-212)||(23754930-23755003)
chr3 (1-41)||(8448093-8448133)
chr3 (1-45)||(23755123-23755167)
chr3 (139-171)||(27073397-27073429)
[»] scaffold0386 (4 HSPs)
scaffold0386 (3-217)||(14071-14282)
scaffold0386 (11-72)||(5573-5634)
scaffold0386 (315-394)||(5203-5282)
scaffold0386 (311-394)||(9479-9562)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-226)||(42059-42285)
[»] scaffold1339 (1 HSPs)
scaffold1339 (142-212)||(706-776)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-42)||(27466-27507)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 19093605 - 19094017
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  19093605 gaggttcatcttagaaccctaacctataaatatctagttacacattataattaagacaaaatacaaaaagataaaaaaaacataccctagaaaagataga 19093704  T
Q  101 agaagatagaactcctcataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggga 200  Q
    |||| |||          |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19093705 agaaaata----------taactcctagaatcacatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacagtatttataggga 19093794  T
Q  201 aagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggcgcctagctccccct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19093795 aagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggcgcctagctccccct 19093894  T
Q  301 gacatgtgccaggcgctttagtgcaatagctctagggtgcctagcgccccctgtggtgtgcctatgcgcttcagtgtgttttctatgttgttttacctgt 400  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  19093895 gacatgtgccaggcgctttagtgcaatagctatggggtgcctagcgccccctgtggtgtgcctacgcgcttcagtgtgttttctatgttgttttgcctgt 19093994  T
Q  401 tgaggtgttttcttcaatgtgag 423  Q
    |||||||||||||||||||||||    
T  19093995 tgaggtgttttcttcaatgtgag 19094017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5680235 - 5680446
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||| |||||        ||||| ||||||||||| ||    
T  5680235 gaggtttatcttagaaccctagcctataagtatctggttacacatgataactaagacaaaatacaacaagat--aaaaaacatacgctagaaaagatgga 5680332  T
Q  101 agaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||||||||||| | |  |||||||||| || ||  |||||||||||||||||  | |||||||||||  || |||  |||||| || ||||||||    
T  5680333 agaagatagaactcctccttggctcctagaatcgccttcttcttgaactgctccagtcctaaacgagaaattatgattgaggaagacagta-ttataggg 5680431  T
Q  200 aaagtttccacctaa 214  Q
    |||||| ||||||||    
T  5680432 aaagttcccacctaa 5680446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 22350970 - 22350756
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaagac-aaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||||||||||||||||| |||||  |||||||||||||||| |||| |||||| ||||||| |||||||        ||||||||||||||||||| ||    
T  22350970 gttcatcttagaaccctaacctatggatatctagttacacatgataactaagacaaaaatactaaaagat---aaaaacataccctagaaaagataggag 22350874  T
Q  103 aagatagaactcctcat--aactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaaga-caatatttataggg 199  Q
    |||||| |||||||| |     |||||||||  | || ||||||||||||||||||| ||||||||||| || ||||||  ||||    |||||||||||    
T  22350873 aagatataactcctccttggcttcctagaatctccttcctcttgaactgctccagttctgaacgagaaagtgtgaatgaggaagattggtatttataggg 22350774  T
Q  200 aaagtttccacctaactt 217  Q
    ||||||||||||||||||    
T  22350773 aaagtttccacctaactt 22350756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 19927592 - 19927377
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaa-atacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    |||||||| ||||||||| || |||||| |||||||||||| ||| |||| ||||| ||| |||| |||||||        |||||| ||||||||||||    
T  19927592 gaggttcaacttagaaccataacctatagatatctagttacccataataactaagataaatatactaaaagataaaaa---cataccttagaaaagatag 19927496  T
Q  100 aagaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagac-aatatttatag 197  Q
     |||||||||||||||| | | ||||||| ||| |  || ||||||||||| || |||| |||||||||||||| ||||||  || ||  |||||||||     
T  19927495 gagaagatagaactcctccttgactcctataatagtcttcctcttgaactgttctagttctgaacgagaaattgtgaatgaggaaaactgatatttataa 19927396  T
Q  198 ggaaagtttccacctaact 216  Q
    |||||||||||||||||||    
T  19927395 ggaaagtttccacctaact 19927377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 254
Target Start/End: Complemental strand, 20828817 - 20828643
Alignment:
Q  81 cataccctagaaaagatagaagaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatga 179  Q
    ||||||||||||||||||| |||||||||||||||| | |  ||||| |||| || || ||||||||||| ||||||| |||| ||||||||  |||||     
T  20828817 cataccctagaaaagataggagaagatagaactcctccttggctccttgaatcgccttcctcttgaactgatccagttctgaatgagaaattatgaatgt 20828718  T
Q  180 caaagacaatatttatagggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtca 254  Q
      ||| |  |||||||||||||||||||||||| ||||  | ||||| || | | ||||| ||||||||||||||    
T  20828717 ggaaggccgtatttatagggaaagtttccacctgacttgggctaaaagcatgggcttccatgggcgaaaaagtca 20828643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 17277144 - 17277402
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagac-aaaatacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    |||||||||||||||||| || |||||| |||| ||||||||||| |||| |||||| ||||||| | |||||        ||||||||| |||||||      
T  17277144 gaggttcatcttagaaccataacctatagatatatagttacacatgataactaagacaaaaatactataagat---aaaaacataccctaaaaaagat-- 17277238  T
Q  100 aagaagatagaactcctcataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagac-aatatttatagg 198  Q
     ||||||||||||||       |||||||||| || || ||||||||||||||||||| |||||||||| ||   ||| |  ||| |   ||||| ||||    
T  17277239 -agaagatagaactc-------ctcctagaatcgccttcctcttgaactgctccagttttgaacgagaactttttaataaggaaggctggtatttctagg 17277330  T
Q  199 gaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttt 270  Q
    ||||||||||||| |||||  | ||||| || | | |||||  ||| ||||||||| |||||||||||||||    
T  17277331 gaaagtttccaccaaacttgggctaaaatcatgggcttccagaggcaaaaaagtcacgaaaagtgacttttt 17277402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 420
Target Start/End: Original strand, 5685270 - 5685406
Alignment:
Q  284 ggcgcctagctccccctgacatgtgccaggcgctttagtgcaatagctctagggtgcctagcgccccctgtggtgtgcctatgcgcttcagtgtgttttc 383  Q
    |||||||||| ||||||| ||||  | ||||||||||   ||| | || | ||||||||||| ||| || ||||| ||||  | ||||||||| ||||||    
T  5685270 ggcgcctagcgccccctggcatgcactaggcgctttaccacaacatctatggggtgcctagccccctctatggtgcgcctgagtgcttcagtgcgttttc 5685369  T
Q  384 tatgttgttttacctgttgaggtgttttcttcaatgt 420  Q
    | || |||||| | |||||| ||||||||||||||||    
T  5685370 tgtgctgttttgcatgttgatgtgttttcttcaatgt 5685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 9264102 - 9264066
Alignment:
Q  5 ttcatcttagaaccctagcctataaatatctagttac 41  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9264102 ttcatcttagaaccctagcctataaatatttagttac 9264066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 19562718 - 19562587
Alignment:
Q  86 cctagaaaagatagaagaagatagaactcctc-ataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaag 184  Q
    ||||||||||||||||||||||||||||||||  |  |||||| ||  || ||   |||||||||||  |||| |||||||||||||  ||||||  |||    
T  19562718 cctagaaaagatagaagaagatagaactcctcttttgctcctaaaaccgccttcgccttgaactgctatagttctgaacgagaaatt-tgaatgaggaag 19562620  T
Q  185 acaatatttatagggaaagtttccacctaactt 217  Q
     | ||||||||| ||||||| ||||||| ||||    
T  19562619 gcgatatttataaggaaagtatccacctgactt 19562587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10782886 - 10782925
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagtta 40  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  10782886 gaggttcatcttagaaccctagcctaaaaatatttagtta 10782925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 12838784 - 12838707
Alignment:
Q  129 aattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttc 207  Q
    ||||||||| ||||||||||||| | ||| | || ||||||||| ||||||  || |||||||||||||||| ||||||    
T  12838784 aattgcattcctcttgaactgcttc-gttctaaatgagaaattgtgaatgaggaatacaatatttatagggagagtttc 12838707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11252887 - 11252843
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacat 45  Q
    ||||||||||||||||| ||| |||| |||||| |||||||||||    
T  11252887 gaggttcatcttagaactctaacctaaaaatatttagttacacat 11252843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 18202275 - 18202009
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||| |||| |||||||||||||||||||||        ||||||||||||||||||      
T  18202275 gaggttcatcttagaacctaagc-tataaatatctagttacacatgataactaagacaaaatacaaaaagataaaaa---cataccctagaaaagataag 18202180  T
Q  101 agaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||| |||||||| |   |||||| ||| |  || ||||||||||||||||||| |||| ||||||||| ||||||  ||| |  |||||||| ||    
T  18202179 agaagataaaactcctccttggctcctaaaatcgtcttcctcttgaactgctccagttctgaatgagaaattgtgaatgaggaaggcggtatttataagg 18202080  T
Q  200 aaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttt 270  Q
    ||||||||||||||||||  | |||||||| |   ||||| ||||||||||||||||||||||||||||||    
T  18202079 aaagtttccacctaacttgggctaaaaacatggacttccaggggcgaaaaagtcatgaaaagtgacttttt 18202009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 4987546 - 4987837
Alignment:
Q  2 aggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaa-tacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||||| ||| |||||||        ||||| |||||||||||||     
T  4987546 aggttcatcttagaaccctaacctatagatatctagttacacatgataactaagacaaaaatactaaaagataaaaa---catactctagaaaagatagg 4987642  T
Q  101 agaagatagaactcctcataac--tcctagaattgcatttctcttgaactgctcca-gttatgaacgagaaattgcgaatgacaaagacaatatttatag 197  Q
    |||||||||||||||||||     ||||| |||  |  | |||||||||||||||| |||||||||||||||||| ||||||  ||| |  |||||||||    
T  4987643 agaagatagaactcctcattggcttcctataatcaccctcctcttgaactgctccatgttatgaacgagaaattgggaatgaggaaggcggtatttatag 4987742  T
Q  198 ggaaagtttccacctaacttca-gttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggcgcctag 292  Q
    | |||||||||||||||||| | | ||||| || | ||||||| || ||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  4987743 gtaaagtttccacctaacttgaggctaaaatcatgggtttccagggacgaaaaagtcacgaaaagtgac-tttttcgcaagcaacggggcgcctag 4987837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 4991644 - 4991935
Alignment:
Q  2 aggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaa-tacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||||| ||| |||||||        ||||| |||||||||||||     
T  4991644 aggttcatcttagaaccctaacctatagatatctagttacacatgataactaagacaaaaatactaaaagataaaaa---catactctagaaaagatagg 4991740  T
Q  101 agaagatagaactcctcataac--tcctagaattgcatttctcttgaactgctcca-gttatgaacgagaaattgcgaatgacaaagacaatatttatag 197  Q
    |||||||||||||||||||     ||||| |||  |  | |||||||||||||||| |||||||||||||||||| ||||||  ||| |  |||||||||    
T  4991741 agaagatagaactcctcattggcttcctataatcaccctcctcttgaactgctccatgttatgaacgagaaattgggaatgaggaaggcggtatttatag 4991840  T
Q  198 ggaaagtttccacctaacttca-gttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggcgcctag 292  Q
    | |||||||||||||||||| | | ||||| || | ||||||| || ||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  4991841 gtaaagtttccacctaacttgaggctaaaatcatgggtttccagggacgaaaaagtcacgaaaagtgac-tttttcgcaagcaacggggcgcctag 4991935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 3735633 - 3735907
Alignment:
Q  2 aggttcatcttagaaccctagcctataaatatctagttacacattataattaagac-aaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||  |||||||| ||||||        |||||| ||||||||||||     
T  3735633 aggttcatcttagaaccctaacctataaatatctagttacacatgataactaagagtaaaatacagaaagataaaaa---cataccttagaaaagatagg 3735729  T
Q  101 agaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||| |||| ||| |   ||||||||||  | || ||||||||||||| ||||| ||| |||||||||  ||||||  |||    |||||||||||    
T  3735730 agaagataaaacttctccttggctcctagaatcaccttcctcttgaactgctgcagttctgagcgagaaattatgaatgaggaaggtggtatttataggg 3735829  T
Q  200 aaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
    ||||||||| ||||||||  | | |||||| | | ||| | ||||||||||||||  ||| |||||||||||||||||    
T  3735830 aaagtttcctcctaacttgggctcaaaacatggggttctaggggcgaaaaagtcacaaaaggtgacttttttcgcaag 3735907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 8310555 - 8310378
Alignment:
Q  5 ttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaagaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||        | ||| ||||||||||||| ||||    
T  8310555 ttcatcttagaaccctagcctataaatatctagttacacatgataactaaggcaaaatacaaaaagat---aaaaacctactctagaaaagataggagaa 8310459  T
Q  105 gatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaag 184  Q
    ||||||| |||| | |  |||||||||| |  || || |||||||||||||||| |||||||||||||| |||||| ||||    
T  8310458 gatagaaatcctccttggctcctagaatcgtcttcctattgaactgctccagttctgaacgagaaattgtgaatgagaaag 8310378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3190152 - 3189936
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagat-ag 99  Q
    ||||||||||||| || |||||||||||||||||||||||||||| |||| |||||||||||||| ||||||        ||||||||| ||||||| ||    
T  3190152 gaggttcatcttaaaaacctagcctataaatatctagttacacatgataactaagacaaaatacataaagat---aaaaacataccctataaaagataag 3190056  T
Q  100 aagaagatagaactcctcat--aactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatag 197  Q
      ||||||||||||| || |  | |||||||||| ||||| |||||| | |||||||||| ||||| | |||||  ||||||  ||| |  ||| || ||    
T  3190055 gggaagatagaactcttcctcaagctcctagaatcgcattcctcttggattgctccagttctgaacaacaaattatgaatgaggaaggcggtatatacag 3189956  T
Q  198 ggaaagtttccacctaactt 217  Q
    ||||||||||||||| ||||    
T  3189955 ggaaagtttccacctgactt 3189936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 6014540 - 6014610
Alignment:
Q  2 aggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagat 72  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  6014540 aggttcatcttataacgctagcctataaatatctagttacacatcataactaagacaaaatacaaaaagat 6014610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1588531 - 1588599
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaa 69  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| |||||    
T  1588531 gaggttcatcttagaatcctagcctataaatatctagttacacatgataactaagacaaaataaaaaaa 1588599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 394
Target Start/End: Complemental strand, 18201967 - 18201856
Alignment:
Q  282 ggggcgcctagctccccctgacatgtgccaggcgctttagtgcaatagctctagggtgcctagcgccccctgtggtgtgcctatgcgcttcagtgtgttt 381  Q
    |||||||||||| ||||||| |||| ||||||||||||| |||||||   || ||||||||||| |||| ||||||||||||| | ||||||||||||||    
T  18201967 ggggcgcctagcgccccctg-catgcgccaggcgctttaatgcaataatactggggtgcctagcaccccttgtggtgtgcctaggtgcttcagtgtgttt 18201869  T
Q  382 tctatgttgtttt 394  Q
    ||  |||||||||    
T  18201868 tcagtgttgtttt 18201856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 19154257 - 19154469
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaa-gacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||||||||||||| ||| ||||||| ||  |||||||||||  ||| ||| ||||  ||||||||||||        ||||||||| ||||||||  ||    
T  19154257 gttcatcttagaactctaacctataactacttagttacacatggtaactaaagacatgatacaaaaagataaaaa---cataccctataaaagatatgag 19154353  T
Q  103 aagatagaactcctca-taactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    |||||| ||||||||  || |||||||||| || || |||||||||||||| |||| | |||||||||||  ||||||  ||| || |||||||||||||    
T  19154354 aagataaaactcctccctagctcctagaatcgccttcctcttgaactgctctagttctcaacgagaaattatgaatgaggaaggcagtatttatagggaa 19154453  T
Q  202 agtttccacctaactt 217  Q
    | ||||||||| ||||    
T  19154454 attttccacctgactt 19154469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 20753656 - 20753868
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaa-gacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||||||||||||| ||| ||||||| ||  |||||||||||  ||| ||| ||||  ||||||||||||        ||||||||| ||||||||  ||    
T  20753656 gttcatcttagaactctaacctataactacttagttacacatggtaactaaagacatgatacaaaaagataaaaa---cataccctataaaagatatgag 20753752  T
Q  103 aagatagaactcctca-taactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    |||||| ||||||||  || |||||||||| || || |||||||||||||| |||| | |||||||||||  ||||||  ||| || |||||||||||||    
T  20753753 aagataaaactcctccctagctcctagaatcgccttcctcttgaactgctctagttctcaacgagaaattatgaatgaggaaggcagtatttatagggaa 20753852  T
Q  202 agtttccacctaactt 217  Q
    | ||||||||| ||||    
T  20753853 attttccacctgactt 20753868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 277
Target Start/End: Complemental strand, 10585991 - 10585719
Alignment:
Q  5 ttcatcttagaaccctagcctataaatatctagttacacattataattaagac-aaaatacaaaaagatnnnnnnnncataccctagaaaagatagaaga 103  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||| |||||| ||||||  |||||||        ||||||||||||||||||| |||    
T  10585991 ttcatcttagaaccctaacctatagatatctagttacacatgataactaagacaaaaataataaaagat---aaaaacataccctagaaaagatagtaga 10585895  T
Q  104 agatagaactcctcat--aactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    ||||| ||||  || |     ||||| ||   | || |||||||||| ||| |||| |||| |||| |||| ||||||  ||  |  |||||||| ||||    
T  10585894 agatataacttatccttggcttcctataaccaccttcctcttgaacttctctagttctgaaagagatattgtgaatgaggaatgcggtatttataaggaa 10585795  T
Q  202 agtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
     |||| ||||||||||  | ||||| || |   ||||| |||||||||||||| ||||||||||||||||||||||    
T  10585794 cgttttcacctaacttgggctaaaatcacggacttccaggggcgaaaaagtcacgaaaagtgacttttttcgcaag 10585719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 1585652 - 1585789
Alignment:
Q  81 cataccctagaaaagatagaagaagatagaactcctcata-actcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatga 179  Q
    |||||| |||||||||||  |||| ||| |||| ||| |  ||||||||||| || || ||||||||||  || |||| |||||||||||||  ||||||    
T  1585652 cataccatagaaaagataagagaatatataactgctccttgactcctagaatcgccttcctcttgaactattctagttctgaacgagaaattatgaatga 1585751  T
Q  180 caaagacaatatttatagggaaagtttccacctaactt 217  Q
      ||| || | ||||||||||||| ||| |||||||||    
T  1585752 ggaaggcagtgtttatagggaaagcttcgacctaactt 1585789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15870648 - 15870708
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaa 61  Q
    |||||| ||||||||||| ||||||||| ||||||||||| |||| | || ||||||||||    
T  15870648 gaggtttatcttagaaccttagcctatagatatctagttaaacatgacaactaagacaaaa 15870708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 15171411 - 15171340
Alignment:
Q  141 cttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||||||||||||| |||||||||||||||   ||||||  ||| |  |||||||||||||||||| |||||    
T  15171411 cttgaactgctccaattatgaacgagaaataatgaatgattaagccggtatttatagggaaagtttacacct 15171340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6040093 - 6040053
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttac 41  Q
    ||||||||||||| |||||||||||| |||||| |||||||    
T  6040093 gaggttcatcttaaaaccctagcctaaaaatatttagttac 6040053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10938604 - 10938644
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttac 41  Q
    |||||||||||||||||||||||||| ||| || |||||||    
T  10938604 gaggttcatcttagaaccctagcctaaaaagatttagttac 10938644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11804058 - 11804102
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacat 45  Q
    ||||||||||||||||| ||| |||| |||||| |||||||||||    
T  11804058 gaggttcatcttagaactctaacctaaaaatatttagttacacat 11804102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 13288340 - 13288308
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaatt 171  Q
    ||||||||||||||||||| |||||||||||||    
T  13288340 ctcttgaactgctccagttctgaacgagaaatt 13288308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 17190137 - 17190105
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaatt 171  Q
    ||||||||||||||||||| |||||||||||||    
T  17190137 ctcttgaactgctccagttctgaacgagaaatt 17190105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 16112822 - 16113112
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||        ||||| ||| ||||||||      
T  16112822 gaggttcatcttagaaccctagcctataaatatctagttacacatgataactaagacaaaaaacaaaaagat---gacaacatactctaaaaaagatatg 16112918  T
Q  101 agaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||||| ||||| | |  || ||||||| || || |||||||| || || ||||   || ||||||||| |||||| |||| | ||||||||||||    
T  16112919 agaagatagagctcctccttggcttctagaatcgccttcctcttgaagtgttctagttcgtaatgagaaattgtgaatgataaaggcgatatttataggg 16113018  T
Q  200 aaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggcgcctagc 293  Q
    ||||||||||||||||||  | |||||  | | | || ||| ||||||||||| |  ||||||||||||||||||||| || ||||||||||||    
T  16113019 aaagtttccacctaacttgggctaaaattatgggctttcaaaggcgaaaaagttacaaaaagtgacttttttcgcaagtaatggggcgcctagc 16113112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 15572498 - 15572214
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||||||||||||||||||||||||||    ||||| ||||||||||||||||||||||| ||        ||||||||| |||||||||     
T  15572498 gaggttcatcttagaaccctagcctataaatatcta----cacatgataattaagacaaaatacaaaaaaataaaaa---cataccctaaaaaagatagg 15572406  T
Q  101 agaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||| |||||||| |   |||||||||| || || |||||||||||||||| || | ||| || ||||  ||||||  ||| || ||||||||||     
T  15572405 agaagatataactcctccttggctcctagaatcgccttcctcttgaactgctccaattctaaacaaggaattttgaatgaggaaggcagtatttatagga 15572306  T
Q  200 aaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggcgccta 291  Q
    |||  || ||||||||||  | || | ||| | | |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  15572305 aaaaatttcacctaacttgggctatagacatgggcttccaagggcgaaaaagtcacgaaaagtgactttttacgcaagaaatggggcgccta 15572214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 33191716 - 33191880
Alignment:
Q  5 ttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaagaa 104  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||        ||||||||| ||||||||| ||||    
T  33191716 ttcatcttagaaccgtagcctataaatatctagttacacgtgataattaagacaaaatacaaaaagat---aaaaacataccctataaaagataggagaa 33191812  T
Q  105 gatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaatt 171  Q
    |||||||||||| | |  | |||||||| || || ||||||||||||||||||| |||||||||||||    
T  33191813 gatagaactcctccttgtcgcctagaatcgccttcctcttgaactgctccagttctgaacgagaaatt 33191880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 15527606 - 15527394
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaa-gacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||||||||||||| ||| ||||||| ||| |||||| ||||  ||| ||| ||||| ||||||||||||        ||||||||||||||||||| ||    
T  15527606 gttcatcttagaactctaacctataactatttagttatacatggtaactaaagacaagatacaaaaagataaaaa---cataccctagaaaagataggag 15527510  T
Q  103 aagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    |||||||||||||||||   ||||||||||  | || |||||||||||||| |||| |||||||||||||  ||||||  ||| |  |||||||||||||    
T  15527509 aagatagaactcctcatttgctcctagaatcaccttcctcttgaactgctctagttctgaacgagaaattatgaatgaggaaggcggtatttatagggaa 15527410  T
Q  202 agtttccacctaactt 217  Q
    ||||||||||||||||    
T  15527409 agtttccacctaactt 15527394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 24282315 - 24282582
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||| |||        |||| |||||||||||||      
T  24282315 gaggttcatcttacaaccctagcctataaatatctagttacacatgataactaagactaaatacaaaaggat---aaaaacatatcctagaaaagatatg 24282411  T
Q  101 agaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||| ||||||| | |  ||| |||||| || || || |||||||||||||||| |||||| |||| || ||||||         |||||||||||    
T  24282412 agaagatataactcctccttggctcatagaatcgctttcctattgaactgctccagttctgaacgtgaaactgtgaatga-------ggtatttataggg 24282504  T
Q  200 aaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
    |||||||||||||||| |  | ||||||||   | ||| | |||  ||||||||| ||||||||||||| ||||||||    
T  24282505 aaagtttccacctaacctgggctaaaaacataggcttctaggggtaaaaaagtcacgaaaagtgactttgttcgcaag 24282582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16360840 - 16360912
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataa-ttaagacaaaatacaaaaagat 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| | ||||||||||||||||||||    
T  16360840 gaggttcatcttagaaccctagcctataaatatctagttacacatggtaactaaagacaaaatacaaaaagat 16360912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 91 - 282
Target Start/End: Complemental strand, 23035629 - 23035437
Alignment:
Q  91 aaaagatagaagaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaat 189  Q
    ||||||||  ||||||||||||||||| |   |||||| ||| || || ||||||||||||||||||| |||||||||||||  ||||||  ||| || |    
T  23035629 aaaagatatgagaagatagaactcctctttggctcctaaaatcgccttcctcttgaactgctccagttctgaacgagaaattatgaatgaggaaggcagt 23035530  T
Q  190 atttatagggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacg 282  Q
    ||||||||| |||||| ||||||||||   | ||||| || |   ||  | ||||||||||||||| |||||||| ||||||| |||| ||||    
T  23035529 atttataggaaaagttcccacctaactggggctaaaatcatggactttaaggggcgaaaaagtcataaaaagtgatttttttcacaagcaacg 23035437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 44796538 - 44796670
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacctaacttcagttaaaaacaagagtttcc 238  Q
    |||||||||||||||||||||||| ||||||||  ||||||  ||| |  |||||||||||||||| ||||| ||||||  | |||||||| | | ||||    
T  44796538 ctcttgaactgctccagttatgaatgagaaattatgaatgaggaaggcggtatttatagggaaagtctccacttaacttgggctaaaaacatgggcttcc 44796637  T
Q  239 aagggcgaaaaagtcatgaaaagtgactttttt 271  Q
    | | ||||||||||||  |||||||| ||||||    
T  44796638 acgtgcgaaaaagtcacaaaaagtgattttttt 44796670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 22665474 - 22665587
Alignment:
Q  2 aggttcatcttagaaccctagcctataaatatctagttacacattataattaagac-aaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    |||||||||||||||||||| || || ||||||||||||||||| |||| |||||| ||||||| |||||||        |||||||||||||||||||     
T  22665474 aggttcatcttagaaccctaacccatgaatatctagttacacatgataactaagacaaaaatactaaaagat---aaaaacataccctagaaaagatagg 22665570  T
Q  101 agaagatagaactcctc 117  Q
    | |||||||||||||||    
T  22665571 aaaagatagaactcctc 22665587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9787023 - 9786963
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaa 61  Q
    |||||||||| |||||||||| |||||| |||||||||||||||| |||| ||||||||||    
T  9787023 gaggttcatcatagaaccctaacctatagatatctagttacacatgataactaagacaaaa 9786963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 25960250 - 25960140
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaaga 103  Q
    |||||||||||||||||| ||||||||||| ||| ||| ||| |||| || |||||||||||||  |||        |||| |||||||||||||| |||    
T  25960250 gttcatcttagaaccctaacctataaatatgtagctactcatgataactaggacaaaatacaaatggat---aaaaacatatcctagaaaagataggaga 25960154  T
Q  104 agatagaactcctc 117  Q
    ||||||||||||||    
T  25960153 agatagaactcctc 25960140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 26648005 - 26647921
Alignment:
Q  125 ctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttcca 209  Q
    |||||||||  || ||||||||||||||||||| |||||||||| ||  ||||||  ||| | ||||||||||||||||||||||    
T  26648005 ctagaattgtcttcctcttgaactgctccagttttgaacgagaagttatgaatgaggaaggcgatatttatagggaaagtttcca 26647921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 34482098 - 34482169
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccac 210  Q
    ||||||||||||||||||| |||||||||||||   ||| | |||| |  ||||||||||||||||||||||    
T  34482098 ctcttgaactgctccagttctgaacgagaaattataaattagaaaggcggtatttatagggaaagtttccac 34482169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 12011803 - 12011713
Alignment:
Q  122 ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    ||||| |||| || || |||||||||||||||||||  ||| |||||||| |||||||  ||| ||  ||||||||||| |||||||||||    
T  12011803 ctcctggaatcgccttcctcttgaactgctccagttcggaatgagaaattacgaatgaggaaggcagaatttatagggagagtttccacct 12011713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 51470103 - 51469970
Alignment:
Q  81 cataccctagaaaagatagaagaagatagaa-ctcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatg 178  Q
    ||||||||||||||   || ||||||||||| ||||||  || || |||||||||| || ||||||| ||||| |||||||||||||||||||  |||||    
T  51470103 cataccctagaaaaacaaggagaagatagaaactcctctgaagcttctagaattgccttcctcttgagctgcttcagttatgaacgagaaattctgaatg 51470004  T
Q  179 acaaagacaatatttatagggaaagtttccacct 212  Q
    |  |||   |||||||||| || |||||| ||||    
T  51470003 aggaagctgatatttatagtgagagtttctacct 51469970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 17120484 - 17120396
Alignment:
Q  122 ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccac 210  Q
    |||||||||| |  || ||||||||||||||||||| ||| |||||||||  ||||||  ||| || |||||||| ||| |||||||||    
T  17120484 ctcctagaatcgtcttcctcttgaactgctccagttctgatcgagaaattatgaatgagcaaggcagtatttataaggagagtttccac 17120396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27116911 - 27116867
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacat 45  Q
    ||||||||||||||||||||||| || |||||| |||||||||||    
T  27116911 gaggttcatcttagaaccctagcttaaaaatatttagttacacat 27116867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 18100411 - 18100333
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacctaactt 217  Q
    |||||||||| ||| |||| |||||||||||||  ||||||  |||    |||||||||| ||||||||||||||||||    
T  18100411 ctcttgaactactcaagttctgaacgagaaattttgaatgaggaaggttgtatttataggaaaagtttccacctaactt 18100333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22621216 - 22621286
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattat-aattaagacaaaatacaaaaag 70  Q
    ||||||||| |||||||||||||||| ||| || |||||||||||  | ||| |||||||| |||||||||    
T  22621216 gaggttcattttagaaccctagcctaaaaagatttagttacacatggtaaataaagacaaattacaaaaag 22621286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 16786700 - 16786659
Alignment:
Q  136 tttctcttgaactgctccagttatgaacgagaaattgcgaat 177  Q
    |||||||| ||||||||||||| |||||||||||||| ||||    
T  16786700 tttctctttaactgctccagttctgaacgagaaattgtgaat 16786659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 26021869 - 26021926
Alignment:
Q  122 ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatga 179  Q
    ||||||||||||| || |||||||||||||| | || ||||||||||| || ||||||    
T  26021869 ctcctagaattgccttcctcttgaactgctctaattttgaacgagaaaatgtgaatga 26021926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 290
Target Start/End: Original strand, 33191890 - 33191982
Alignment:
Q  199 gaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgac-ttttttcgcaagaaacggggcgcct 290  Q
    |||||||| ||||||||||  | |||||||| |   |||||  ||||||||||||| |||||||| | ||||||||||||||| |||| ||||    
T  33191890 gaaagttttcacctaacttgggctaaaaacatggacttccagtggcgaaaaagtcaagaaaagtgtctttttttcgcaagaaaaggggtgcct 33191982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34481946 - 34481986
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttac 41  Q
    ||||||| |||||||||||||||||| |||||| |||||||    
T  34481946 gaggttcttcttagaaccctagcctaaaaatatttagttac 34481986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 23010846 - 23010630
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagat-ag 99  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||        ||||||||| ||||||| ||    
T  23010846 gaggttcatcttagaaccctggcctataaatatctagttacacatgataactaagacaaaatacaaaaagat---aaaaacataccctataaaagataag 23010750  T
Q  100 aagaagatagaactcctcat--aactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatag 197  Q
     |||||||||||||| || |  | ||||||||||  | |||||||||||||||||||||| |||||||||||||  ||||||  ||| || ||||||||     
T  23010749 gagaagatagaactcttcctgaagctcctagaatctcctttctcttgaactgctccagttctgaacgagaaattatgaatgaggaaggcagtatttataa 23010650  T
Q  198 ggaaagtttccacctaactt 217  Q
    ||||||||||||||| ||||    
T  23010649 ggaaagtttccacctgactt 23010630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 291
Target Start/End: Complemental strand, 11465119 - 11464833
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaaga 103  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| |||| ||        |||||| |||||||||||| |||    
T  11465119 gttcatcttagaaccctaacctataaatatctagttacacatgataactaagacaaaatactaaaacataaaaa---cataccttagaaaagataggaga 11465023  T
Q  104 agatagaactcctcataac--tcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    ||||| |||||||| |     |||||||||    || ||||| |||||||||||||||||||||||||||  ||||||  ||| || |||| ||||||||    
T  11465022 agatataactcctccttggcttcctagaatcttcttcctcttaaactgctccagttatgaacgagaaattatgaatgaggaaggcagtattcatagggaa 11464923  T
Q  202 agtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggcgccta 291  Q
     |||||||||||||||  | ||||| || | | ||| | ||| ||||||||||  ||||||||||||||||||||||||| | |||||||    
T  11464922 cgtttccacctaacttgggctaaaatcatggggttctacgggagaaaaagtcacaaaaagtgacttttttcgcaagaaacagagcgccta 11464833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 32086372 - 32086582
Alignment:
Q  5 ttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaagaa 104  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||        ||||  ||||||||||||| ||||    
T  32086372 ttcatgttagaaccctagcctataaatatctagttacacatgataactaagacaaaatacaaaaagat---aaaaacatattctagaaaagataggagaa 32086468  T
Q  105 gatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaag 203  Q
    |||||||||||| | |  ||||||||||  | || ||||||||||||| ||||| |||||||||||||| ||||||  |||||  |||||||||||||||    
T  32086469 gatagaactcctccttggctcctagaatcaccttcctcttgaactgctacagttctgaacgagaaattgtgaatgaggaagacggtatttatagggaaag 32086568  T
Q  204 tttccacctaactt 217  Q
    | | ||||||||||    
T  32086569 tattcacctaactt 32086582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 270
Target Start/End: Original strand, 29032217 - 29032482
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaag-acaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||||||||||||| ||| |||||| |||||||||||||||| |||| |||| | |||||||||||||||        ||||||||||||||||||  ||    
T  29032217 gttcatcttagaactctaacctatagatatctagttacacatgataactaagtaaaaaatacaaaaagataaaac---cataccctagaaaagatatgag 29032313  T
Q  103 aagatagaactcctcataac--tcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggga 200  Q
    |||||||||| |||| |     ||||||||| || || |||||||||  |||||||| |||| ||||||||| ||||||  |||||||||||||||||||    
T  29032314 aagatagaacacctccttggcttcctagaatcgccttcctcttgaacatctccagttttgaatgagaaattgtgaatgaagaagacaatatttataggga 29032413  T
Q  201 aagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttt 270  Q
    |||||||||||||||||  | ||||| |||| | || || ||||| ||||||||  ||||||||||||||    
T  29032414 aagtttccacctaacttaggctaaaatcaagggctttcacgggcg-aaaagtcacaaaaagtgacttttt 29032482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 18552579 - 18552872
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaata--caaaaagatnnnnnnnncataccctagaaaagata 98  Q
    ||||||||||||||||||||||||| ||||||||||| |||| || | || || |||||||||  ||||||||         ||||||||||||||||||    
T  18552579 gaggttcatcttagaaccctagcctttaaatatctagctacatatgagaactatgacaaaatatacaaaaagaaaaaaaaaacataccctagaaaagata 18552678  T
Q  99 gaagaagatagaactcctca-taactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatag 197  Q
    | |||||||||||| ||||| |  || ||||||| || || ||||||| |||||| |||| |||||||||||||  ||||||  |||    |||||||||    
T  18552679 ggagaagatagaacacctcattggcttctagaatcgccttcctcttgatctgctctagttttgaacgagaaattttgaatgaggaaggtggtatttatag 18552778  T
Q  198 ggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggcgccta 291  Q
    ||||||||||||||||||||  | ||||||||   | ||| | ||| ||||||||||  |||  ||||||||||||||||  ||||| ||||||    
T  18552779 ggaaagtttccacctaacttgggctaaaaacattggcttctaggggtgaaaaagtcacaaaatatgacttttttcgcaagtgacgggccgccta 18552872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 20173712 - 20173460
Alignment:
Q  23 cctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaagaagatagaactcctcataa- 121  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||||||||         ||||  ||| ||||||||| | ||||||||||||||| |       
T  20173712 cctataaatatcttgttacacatgataactaagacaaaatacaaaaaga---caaaaacatagtctataaaagataggacaagatagaactcctccttgg 20173616  T
Q  122 ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacctaacttcagt 221  Q
    ||||||||||  |||| |||||||||||||||| || |||||||||||||  || |||  || ||  ||||| || ||||| ||||||||| |||| ||     
T  20173615 ctcctagaatcacattcctcttgaactgctccaattctgaacgagaaattatgagtgaggaaaaccgtatttgtatggaaattttccacctgacttgagc 20173516  T
Q  222 taaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
    |||||||| | | ||| | |||| |||||||||  |||||||||||||||||||||    
T  20173515 taaaaacatgggcttctaggggctaaaaagtcacaaaaagtgacttttttcgcaag 20173460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 29834168 - 29834440
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagaca-aaatacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    |||||||||||||||||| || |||||||||||||| |||||||| |||| ||||||| | |||| |||||||        |||||||||||||||||||    
T  29834168 gaggttcatcttagaaccataacctataaatatctatttacacatgataactaagacatacatactaaaagat---agacacataccctagaaaagatag 29834264  T
Q  100 aagaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaa-gacaatatttatag 197  Q
     ||||||| |||||||| | |  |||||| ||| || || | ||||||||| || ||||||||||||||||||  |||||| ||| |    |||| ||||    
T  29834265 gagaagattgaactcctccttggctcctataatagccttccacttgaactgatctagttatgaacgagaaattatgaatgagaaaggttgttattcatag 29834364  T
Q  198 ggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgc 274  Q
    ||||||||||||||||||||    ||||| || | | ||||| ||| | ||||||||  ||||||||||||||||||    
T  29834365 ggaaagtttccacctaacttggtctaaaatcatgggcttccaggggtg-aaaagtcagtaaaagtgacttttttcgc 29834440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 25884143 - 25883975
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagat-agaag 102  Q
    |||||||||||||||||||| ||||||||||||||||||| | | || |||||||||||| |||||||         ||||||||||||||||| || ||    
T  25884143 gttcatcttagaaccctagcttataaatatctagttacacgtgaaaactaagacaaaata-aaaaaga-gataaacacataccctagaaaagataaggag 25884046  T
Q  103 aagatagaactcctcat--aactcctagaattgcatttctcttgaactgctccagttatgaacgagaaatt 171  Q
    ||||||||||||||| |  |  ||||||||| || || ||||||||||| ||||||| |||||||||||||    
T  25884045 aagatagaactcctcctgaagatcctagaatcgccttcctcttgaactgttccagttctgaacgagaaatt 25883975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 23006319 - 23006149
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagat-ag 99  Q
    |||||||||||||||  | ||||||||||||||| |||||||||| |||| |||||||||||||||||||||        ||||||||||||||||| ||    
T  23006319 gaggttcatcttagacacttagcctataaatatccagttacacatgataactaagacaaaatacaaaaagat---aaaagcataccctagaaaagataag 23006223  T
Q  100 aagaagatagaactcctcat--aactcctagaattgcatttctcttgaactgctccagttatgaacgagaaatt 171  Q
    ||||||||| |||||||| |  | |||||| |||  | || |||| ||||||||||| || |||| ||||||||    
T  23006222 aagaagataaaactcctcgtgaagctcctataatcaccttcctctcgaactgctccaattctgaatgagaaatt 23006149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 18459604 - 18459490
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagac-aaaatacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    |||||||||| |||||||||| |||||| |||||||||||||||| |||| |||||| ||||||| |||||||        |||||||||||||||||||    
T  18459604 gaggttcatcatagaaccctaacctatagatatctagttacacatgataactaagacaaaaatactaaaagat---aaaaacataccctagaaaagatag 18459508  T
Q  100 aagaagatagaactcctc 117  Q
     |||||||||||||||||    
T  18459507 gagaagatagaactcctc 18459490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 29850370 - 29850620
Alignment:
Q  2 aggttcatcttagaaccctagcctataaatatctagttacacattataattaagaca-aaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    |||||||| |||||||| || ||||||||||||||||||||||| | || ||||||| |||||| |||||||        ||||||||||||||||||      
T  29850370 aggttcattttagaaccttaacctataaatatctagttacacatgaaaactaagacataaatactaaaagat---aaaaacataccctagaaaagatatg 29850466  T
Q  101 agaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagac-aatatttatagg 198  Q
    |||||||| ||||||| | |   ||||| ||| || || | ||||||||||||||||| |||| ||||||||| ||||||  ||  |   |||| |||||    
T  29850467 agaagataaaactcctccttggatcctataatagccttccacttgaactgctccagttctgaaagagaaattgtgaatgaggaattctggtattcatagg 29850566  T
Q  199 gaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagt 252  Q
    ||||||||| |||||||||  | ||||| || ||| |||||  |||||||||||    
T  29850567 gaaagtttcaacctaacttgggctaaaatcacgagcttccagaggcgaaaaagt 29850620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 19199147 - 19199015
Alignment:
Q  81 cataccctagaaaagatagaagaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatga 179  Q
    ||||||||||||||||||| |||||||| |||| ||| |   |||||||||| || || |||||||||||||| |||| |||||||||||||  ||||||    
T  19199147 cataccctagaaaagataggagaagataaaacttctccttggctcctagaatcgccttcctcttgaactgctcaagttctgaacgagaaattatgaatga 19199048  T
Q  180 caaagacaatatttatagggaaagtttccacct 212  Q
      ||| |  |||||||||| ||| |||||||||    
T  19199047 ggaaggcggtatttataggaaaattttccacct 19199015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 24381380 - 24381589
Alignment:
Q  8 atcttagaaccctagcctataaatatctagttacacattataattaagac-aaaatacaaaaagatnnnnnnnncataccctagaaaagatagaagaaga 106  Q
    |||||||||||||| |||| | |||||||||||||||| |||| |||||| ||||||| |||||||        |||| |||||||||||||| ||||||    
T  24381380 atcttagaaccctaaccta-agatatctagttacacatgataactaagacaaaaatactaaaagat---aaaagcatagcctagaaaagatagtagaaga 24381475  T
Q  107 tagaactcctcat--aactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatga-caaagacaatatttatagggaaag 203  Q
    || |||||||| |     ||||||||| |  || ||||||||||||| ||||| |||| |||| |||| ||||||  || ||  | ||||||| ||||||    
T  24381476 tataactcctccttggcttcctagaatcgtcttcctcttgaactgcttcagttctgaaagagacattgtgaatgaggaaggatgacatttataaggaaag 24381575  T
Q  204 tttccacctaactt 217  Q
    |||| |||||||||    
T  24381576 tttctacctaactt 24381589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 28766273 - 28766330
Alignment:
Q  122 ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatga 179  Q
    |||||||||| || |||||||||||  ||||||||| |||||||||||||| ||||||    
T  28766273 ctcctagaatagcctttctcttgaaacgctccagttctgaacgagaaattgtgaatga 28766330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 18459443 - 18459357
Alignment:
Q  191 tttatagggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
    |||||||  ||| |||||||||||||| || ||||| ||  ||||| || |||||||||||||   ||||||||||||||| |||||    
T  18459443 tttatagaaaaattttccacctaacttgagctaaaatcataagttttcaggggcgaaaaagtcgcaaaaagtgactttttttgcaag 18459357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17891003 - 17891043
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttac 41  Q
    ||||||||||||||||||| |||||| |||||| |||||||    
T  17891003 gaggttcatcttagaaccccagcctaaaaatatttagttac 17891043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 20175179 - 20175247
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataa-ttaagacaaaatacaaaaaga 71  Q
    ||||||||||||||||||||||| ||| || ||| |||||||  ||| | |||||||| ||||||||||    
T  20175179 gttcatcttagaaccctagcctaaaaagatttagctacacatggtaactaaagacaaattacaaaaaga 20175247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27419214 - 27419254
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttac 41  Q
    |||||||||||||||||||||| ||| |||||| |||||||    
T  27419214 gaggttcatcttagaaccctaggctaaaaatatttagttac 27419254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27420360 - 27420400
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttac 41  Q
    |||||||||||||||||||||| ||| |||||| |||||||    
T  27420360 gaggttcatcttagaaccctaggctaaaaatatttagttac 27420400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41789831 - 41789791
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttac 41  Q
    |||||||||||||||||||||||||| ||| || |||||||    
T  41789831 gaggttcatcttagaaccctagcctaaaaaaatttagttac 41789791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 18514191 - 18513930
Alignment:
Q  29 aatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaagaagatagaactcctcataa-ctccta 127  Q
    ||||||||||||||||| |||| | |||||||||||||||||||        ||||||||||||||||||| ||||||||||||| ||| |   ||||||    
T  18514191 aatatctagttacacatgataactcagacaaaatacaaaaagataaaaa---cataccctagaaaagataggagaagatagaactgctccttggctccta 18514095  T
Q  128 gaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacctaacttcagttaaaaa 227  Q
    |||| || |||||||||||||| || ||||||||| ||||||||| ||||||  ||| |  ||||||| | |||| ||||||||||||||  ||| ||||    
T  18514094 gaatcgcctttctcttgaactgttctagttatgaatgagaaattgtgaatgaggaaggcggtatttattgtgaaattttccacctaacttgggttgaaaa 18513995  T
Q  228 caagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggcgcctag 292  Q
    || | | | ||| |||||||| ||||| | |||||||||||||||||||||  || |||||||||    
T  18513994 catgggctcccatgggcgaaagagtcacgcaaagtgacttttttcgcaagagtcgaggcgcctag 18513930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 24264533 - 24264321
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||        |||| ||||||||||||||     
T  24264533 gaggttcatcttagaaccctagcatataaatatttagttacacatgataattaagacaaaatacgaaaagat----aaaacatatcctagaaaagatagg 24264438  T
Q  101 agaagatagaactcctc-ataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||| | ||||||  |  ||| ||||||    || ||||| |||| ||| | || |||||||||||||| ||||||| || |   ||||||||| |    
T  24264437 agaagataaagctcctctttgtctcatagaatcatcttcctcttaaacttctctatttttgaacgagaaattgtgaatgacgaatatggtatttatagag 24264338  T
Q  200 aaagtttccacctaact 216  Q
    |||||||||||||||||    
T  24264337 aaagtttccacctaact 24264321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 24341163 - 24340950
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||        |||| ||||||||||||||     
T  24341163 gaggttcatcttagaaccctagcatataaatatttagttacacatgataattaagacaaaatacgaaaagat---aaaaacatatcctagaaaagatagg 24341067  T
Q  101 agaagatagaactcctc-ataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||| | ||||||  |  ||| ||||||    || ||||| |||| ||| | || |||||||||||||| ||||||| || |   ||||||||| |    
T  24341066 agaagataaagctcctctttgtctcatagaatcatcttcctcttaaacttctctatttttgaacgagaaattgtgaatgacgaatatggtatttatagag 24340967  T
Q  200 aaagtttccacctaact 216  Q
    |||||||||||||||||    
T  24340966 aaagtttccacctaact 24340950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 18831514 - 18831726
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaa-gacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||||||||||||| ||| ||||||| ||| |||||||||||  ||| ||| ||||| ||||||||||||        ||||||||||||||||||| ||    
T  18831514 gttcatcttagaactctaacctataactatttagttacacatcgtaactaaagacaagatacaaaaagataaaaa---cataccctagaaaagataggag 18831610  T
Q  103 aagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    |||||||||||||| | |  |||||||||| || || |||||||||||||| || | | ||||| |||||  ||||||  |||||  |||||||| ||||    
T  18831611 aagatagaactcctccttggctcctagaatcgccttcctcttgaactgctcaagatctaaacgaaaaattttgaatgaggaagacggtatttataaggaa 18831710  T
Q  202 agtttccacctaactt 217  Q
    ||||||||||| ||||    
T  18831711 agtttccacctgactt 18831726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 18938949 - 18939080
Alignment:
Q  81 cataccctagaaaagatagaagaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatga 179  Q
    |||| |||||||||||||| ||||||||||||||||| |   ||||||||||||| || || ||||||||||| |||| |||||||||||||  ||||||    
T  18938949 catatcctagaaaagataggagaagatagaactcctccttggctcctagaattgccttccttttgaactgctctagttctgaacgagaaattatgaatga 18939048  T
Q  180 caaagacaatatttatagggaaagtttccacc 211  Q
      |||   ||||||||||||||||||||||||    
T  18939049 ggaaggagatatttatagggaaagtttccacc 18939080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 217
Target Start/End: Complemental strand, 18206564 - 18206425
Alignment:
Q  81 cataccctagaaaagata-gaagaagatagaactcctcataa--ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaat 177  Q
    |||||||||||||||||| | || |||||||||||||| | |  |||||| ||| |  || ||||||||||||||||||| ||||||||||||| |||||    
T  18206564 cataccctagaaaagataaggaggagatagaactcctcctgaagctcctaaaatcgtcttcctcttgaactgctccagttctgaacgagaaattacgaat 18206465  T
Q  178 gacaaagacaatatttatagggaaagtttccacctaactt 217  Q
    ||  || ||| ||| |||||||||||||||||||| ||||    
T  18206464 gaggaatacactatctatagggaaagtttccacctgactt 18206425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24266088 - 24266017
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagat 72  Q
    ||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| |||||||||    
T  24266088 gaggttcatcttagaaccctaacctataaatatctagttacacgtgataactaagacaaaattcaaaaagat 24266017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24342719 - 24342648
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagat 72  Q
    ||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| |||||||||    
T  24342719 gaggttcatcttagaaccctaacctataaatatctagttacacgtgataactaagacaaaattcaaaaagat 24342648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 24264321 - 24264233
Alignment:
Q  189 tatttatagggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
    ||||||||| ||||||||||||||||||| || ||||| || ||| || || ||||||||||||||  |||||||||||||||||||||    
T  24264321 tatttatagagaaagtttccacctaacttgagctaaaatcacgagctttcaggggcgaaaaagtcacaaaaagtgacttttttcgcaag 24264233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 24340950 - 24340862
Alignment:
Q  189 tatttatagggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
    ||||||||| ||||||||||||||||||| || ||||| || ||| || || ||||||||||||||  |||||||||||||||||||||    
T  24340950 tatttatagagaaagtttccacctaacttgagctaaaatcacgagctttcaggggcgaaaaagtcacaaaaagtgacttttttcgcaag 24340862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 24661661 - 24661483
Alignment:
Q  5 ttcatcttagaaccctagcctataaatatctagtt-acacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagata-gaag 102  Q
    |||||||||||| |||| ||||||||||||||||| |||||| |||| ||||||||| || |||||  |        ||||||||| |||||||| | ||    
T  24661661 ttcatcttagaaacctatcctataaatatctagtttacacatgataactaagacaaactaaaaaaaattaaaa----cataccctataaaagataaggag 24661566  T
Q  103 aagatagaactcct-cataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaa 183  Q
    |||||| ||||||| | ||| |||||||||| || || ||||||||||||||| ||| ||||| |||||||  ||||||||||    
T  24661565 aagataaaactccttcttaagctcctagaatcgccttcctcttgaactgctcctgttctgaactagaaattatgaatgacaaa 24661483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 24162690 - 24162617
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||||||| |||| |||||||||||||||||||  ||||||  |||||  |||||||||| |||||||||||||    
T  24162690 ctcttgaattgcttcagttatgaacgagaaattatgaatgaggaagacggtatttataggaaaagtttccacct 24162617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26121682 - 26121754
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataa-ttaagacaaaatacaaaaagat 72  Q
    ||||||||||||||||||||| |||| ||| || |||||||||||| ||| | |||||||| |||||||||||    
T  26121682 gaggttcatcttagaaccctatcctaaaaagatttagttacacattgtaactaaagacaaattacaaaaagat 26121754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 17470225 - 17470182
Alignment:
Q  136 tttctcttgaactgctccagttatgaacgagaaattgcgaatga 179  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||    
T  17470225 tttctcttgaactgctccagtaatgaacgagaaatagagaatga 17470182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19762363 - 19762323
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttac 41  Q
    |||||| ||||||||||||||||||| |||||| |||||||    
T  19762363 gaggtttatcttagaaccctagcctaaaaatatttagttac 19762323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23266120 - 23266188
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataatta-agacaaaatacaaaa 68  Q
    |||||||||||||||| |||| |||| ||| || ||||||||||| |||| || ||||||| |||||||    
T  23266120 gaggttcatcttagaatcctaacctaaaaagatttagttacacataataactatagacaaagtacaaaa 23266188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 2638039 - 2638314
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    |||||||||||||||| ||||||||||||||||||||||| |||  |||| ||||||||||||| |||||||        || ||| |||||||||| |     
T  2638039 gaggttcatcttagaaacctagcctataaatatctagttaaacacaataactaagacaaaatactaaaagat---aaaaacaaaccatagaaaagattgg 2638135  T
Q  101 agaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||||||||||| | || ||||||||||  | || |||||||||||||||| || |||||||||| ||| ||||||         |||||||||||    
T  2638136 agaagatagaactcctccttagctcctagaatctccttactcttgaactgctccaattttgaacgagaagttgtgaatga-------ggtatttataggg 2638228  T
Q  200 aaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggc 286  Q
    ||||||||||||||||||  | |||| ||| | | ||| | |||||||||||||| |||||||||||||||  ||||| ||||||||    
T  2638229 aaagtttccacctaacttgggctaaatacatg-gcttcgaggggcgaaaaagtcacgaaaagtgactttttctgcaaggaacggggc 2638314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 270
Target Start/End: Original strand, 14271180 - 14271446
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaa-gacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    ||||||||||||||  || ||||||| ||  |||||||||||  ||| ||| ||||| ||||||||||||        ||||||||||||||||||| ||    
T  14271180 gttcatcttagaactttaacctataactacttagttacacatggtaactaaagacaagatacaaaaagataaaaa---cataccctagaaaagataggag 14271276  T
Q  103 aagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    ||||||||||||||| ||  |||||||||| || || ||||||||||||||||||| |||||||||||||  ||||||  ||| |  |||||| ||||||    
T  14271277 aagatagaactcctcctagtctcctagaatcgccttcctcttgaactgctccagttctgaacgagaaattatgaatgaggaaggcggtatttacagggaa 14271376  T
Q  202 agtttccacctaacttcagttaaaaacaagag-tttccaagggcgaaaaagtcatgaaaagtgacttttt 270  Q
    ||||||||||||||||  | |||||  | | | |||||| ||||||||||||||  ||||||||||||||    
T  14271377 agtttccacctaacttagggtaaaagtatgggttttccaggggcgaaaaagtcacaaaaagtgacttttt 14271446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 4 - 277
Target Start/End: Original strand, 6886001 - 6886274
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaa-gacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||||||||||||| ||||||||||| ||  ||||||| |||  ||| ||| ||||| ||| ||||||||        |||||||||||| |||||| ||    
T  6886001 gttcatcttagaactctagcctataactaattagttactcatggtaactaaagacaagatataaaaagataaaaa---cataccctagaatagataggag 6886097  T
Q  103 aagatagaactcctcata-actcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    ||||||||||||||| |  |||||||||||  | || ||| |||||||||| |||| |||||||||||||  ||||||  ||||| ||||||||||||||    
T  6886098 aagatagaactcctccttgactcctagaatctccttcctcatgaactgctctagttctgaacgagaaattatgaatgaggaagacgatatttatagggaa 6886197  T
Q  202 agtttccacctaacttcagttaaaaacaagag-tttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
    ||||||||||| | || || |||||| | | | |||  | ||||||||||||||  || |||||||| |||||||||    
T  6886198 agtttccacctgaattaagctaaaaatatgggctttataggggcgaaaaagtcacaaatagtgacttctttcgcaag 6886274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 286
Target Start/End: Original strand, 7984499 - 7984685
Alignment:
Q  102 gaagatagaactcctca-taactcctagaattgcatttctcttgaactgctccagttatgaacga-gaaattgcgaatgacaaagacaatatttataggg 199  Q
    ||||||||||||||||  | ||| |||||||||| || |||| ||||||||||||||||||||||  |||||| ||||||| ||| |  |||||||| ||    
T  7984499 gaagatagaactcctccctgacttctagaattgccttcctctagaactgctccagttatgaacgataaaattgtgaatgacgaaggcggtatttatatgg 7984598  T
Q  200 aaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaagaaacggggc 286  Q
    ||||||||||||||||||  | |||| | | | | ||||| ||||||||||| || ||||||||||||||| |||||| ||| ||||    
T  7984599 aaagtttccacctaacttgggctaaataaatgggcttccaggggcgaaaaagccacgaaaagtgactttttccgcaaggaacagggc 7984685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 277
Target Start/End: Complemental strand, 37527813 - 37527543
Alignment:
Q  2 aggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaa-tacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||| ||||| || |||||| |||||||||||||||| |||| ||||| |||| ||| |||||||        ||||||||||||||||||||    
T  37527813 aggttcatcttggaaccttaacctatagatatctagttacacatgataactaagataaaaatactaaaagataaaag---cataccctagaaaagataga 37527717  T
Q  101 agaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaa-tatttatagg 198  Q
    |||||||| |||||||| |   ||||||||||| |     ||||||||||||| |||| ||||||| |||||  ||||||  |||||   ||||||||||    
T  37527716 agaagatataactcctccttggctcctagaattcc-----tcttgaactgctctagttctgaacgataaattatgaatgaggaagactggtatttatagg 37527622  T
Q  199 gaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
     ||| ||||||||||||||    ||||| || ||| || || ||||||||||||||  ||||| |||||||||||||||    
T  37527621 aaaaatttccacctaacttggactaaaatcacgagctttcaggggcgaaaaagtcacaaaaagcgacttttttcgcaag 37527543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 19787863 - 19787998
Alignment:
Q  84 accctagaaaagatagaagaagatagaactcctcata-actcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaa 182  Q
    |||||||||||||||| |||||||| |||||||| |  |||| || ||| || || ||||||||||||||||||| |||||||||||||| |||| |  |    
T  19787863 accctagaaaagataggagaagatataactcctccttgactcataaaatagccttcctcttgaactgctccagttctgaacgagaaattgtgaataagga 19787962  T
Q  183 agac-aatatttatagggaaagtttccacctaactt 217  Q
    ||||  ||||||||| ||||||||| ||||||||||    
T  19787963 agactgatatttataaggaaagttttcacctaactt 19787998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 25181506 - 25181290
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaa-tacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    ||||||||||||||||  ||| | |||| |||||||||| ||||| |||| |||||||||| | | |||||||        |||||| || ||||||||     
T  25181506 gaggttcatcttagaattctaacttatagatatctagtttcacatgataactaagacaaaaattctaaaagataaaaa---cataccataaaaaagatat 25181410  T
Q  100 aagaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagac-aatatttatag 197  Q
     |||||||| ||||| || |   |||||||||| || || ||||||| ||||||||||| |||||||||||||| ||||||  ||| |   |||||||||    
T  25181409 gagaagataaaactcttccttggctcctagaatagccttcctcttgagctgctccagttctgaacgagaaattgtgaatgaggaaggctggtatttatag 25181310  T
Q  198 ggaaagtttccacctaactt 217  Q
    | ||||||||||||||||||    
T  25181309 gaaaagtttccacctaactt 25181290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 28275756 - 28275674
Alignment:
Q  126 tagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatt--tatagggaaagttt 206  Q
    |||||| || || |||||||||||||||| ||||||||||||||||  ||||||  ||| | |||||  ||||||||||||||    
T  28275756 tagaatcgccttcctcttgaactgctccatttatgaacgagaaattatgaatgaggaaggcgatatttatatagggaaagttt 28275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 24091446 - 24091544
Alignment:
Q  296 cccctgacatgtgccaggcgctttagtgcaatagctctagggtgcctagcgccccctgtggtgtgcctatgcgcttcagtgtgttttctatgttgtttt 394  Q
    |||||| ||||  ||||||||||||||||| |||||    | ||||||||| |||||||||||||| |  |||||| |||| ||||||  |||||||||    
T  24091446 cccctggcatgctccaggcgctttagtgcattagctacgagatgcctagcgtcccctgtggtgtgcttgggcgctttagtgcgttttcagtgttgtttt 24091544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 26139314 - 26139346
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaatt 171  Q
    ||||||||||||||||||| |||||||||||||    
T  26139314 ctcttgaactgctccagttctgaacgagaaatt 26139346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 40616 - 40884
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagata-g 99  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||        |||||||||| ||||||| |    
T  40616 gaggtttatcttagaaccctaacctataaatatctagttacacatgataactaagacaaaatataaaaagat---aaaaacataccctaggaaagatagg 40712  T
Q  100 aagaagatagaactcc-tcataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagg 198  Q
     ||||||||||||||| || ||||||||||||  ||||| |||||||||  |||||||| |||||||||||||| ||||||   || || ||| |||||     
T  40713 gagaagatagaactccttcttaactcctagaaccgcattgctcttgaacaactccagttctgaacgagaaattgtgaatgatgtaggcattatatataga 40812  T
Q  199 gaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttt 270  Q
    ||||||||||  |||||||  | ||| | || | | || || ||| ||||||||||  ||||||||||||||    
T  40813 gaaagtttccttctaacttgggctaagatcacgggctttcatgggtgaaaaagtcacaaaaagtgacttttt 40884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 19245612 - 19245811
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||        |||| | ||||||||||||     
T  19245612 gaggttcatcttaaaaccctagcctataaatatctagttacacatgataattaagacaaaatatagaaagat---aaaaacatatcatagaaaagatagg 19245708  T
Q  101 agaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||||||| || | || | |  |||||||||| || || |||||||||| ||| |||| |||||||||||||| |||||| |||||| ||||||||||||    
T  19245709 agaagataaaatttctccttgcctcctagaatcgccttcctcttgaactactctagttctgaacgagaaattgtgaatgagaaagacgatatttataggg 19245808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 11177978 - 11178190
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaagac-aaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||||||||         ||| ||||||||| |||| ||    
T  11177978 gttcatcttagaaccctaacctatagatatctagttacacatgataactaagacaaaaatacaaaaagataaaaat---atatcctagaaaatataggag 11178074  T
Q  103 aagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    |||||| ||||||| | | ||||||| ||| || || || ||||||||||| |||| |||||||||||||| ||||||  ||||| |||||| ||  |||    
T  11178075 aagatataactcctccttgactcctataatagccttcctattgaactgctcaagttctgaacgagaaattgtgaatgaggaagactatatttgtatagaa 11178174  T
Q  202 agtttccacctaactt 217  Q
    ||||| ||||||||||    
T  11178175 agttttcacctaactt 11178190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 21687937 - 21687728
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |        |||||||||||||||||||     
T  21687937 gaggttcatcttagaaccctagcctataaatatctagttacacatgataactaagacaaaatacaaaaaggt---aaaaacataccctagaaaagatagg 21687841  T
Q  101 agaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttataggg 199  Q
    |||| | ||||||||| | |  |||||| |||  | || |||||||||| ||||| || |||||||||||||  ||||||  ||||   ||||| || ||    
T  21687840 agaatagagaactcctccttgcctcctaaaatcaccttcctcttgaacttctccacttctgaacgagaaattatgaatgaggaagatggtatttttatgg 21687741  T
Q  200 aaagtttccacct 212  Q
    |||||||| ||||    
T  21687740 aaagtttctacct 21687728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 269
Target Start/End: Original strand, 22569156 - 22569418
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaaga 103  Q
    |||||||||| ||| |||| |||||||||||||||||||||| |||| |||||||| ||||||||||||        |||||| ||| |||||||| |||    
T  22569156 gttcatcttacaactctagtctataaatatctagttacacataataactaagacaagatacaaaaagat---aaaaacataccgtag-aaagataggaga 22569251  T
Q  104 agatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaa 202  Q
    ||||||||||||| | |  |||||| |||| | || |||||||||||||| |||| | |||||||||||  ||||||  ||| | |||||||||  ||||    
T  22569252 agatagaactcctccttggctcctataatttccttcctcttgaactgctctagttctcaacgagaaattatgaatgaggaaggcgatatttatatagaaa 22569351  T
Q  203 gtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgactttt 269  Q
     ||| ||||| ||||  | |||||||| |||  || | ||| |||||||||||||||||| ||||||    
T  22569352 ttttacacctgacttgggctaaaaacatgagcatctaggggagaaaaagtcatgaaaagttactttt 22569418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 6629742 - 6629472
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaa-tacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    |||| |||||||| ||||||| ||||||||||| || |||||||| ||||  ||||||||| ||| |||||||        ||||||||||||||||||     
T  6629742 gagggtcatcttataaccctaacctataaatatttatttacacatgataacaaagacaaaaatactaaaagataaaaa---cataccctagaaaagataa 6629646  T
Q  100 aagaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagac-aatatttatag 197  Q
    ||||||||||||||||| | ||||||||||||| || |   ||||||||||||| |||| |||||| ||||||| ||||||  ||| |   | |||||||    
T  6629645 aagaagatagaactcctccctaactcctagaatagcctgcttcttgaactgctctagttctgaacgtgaaattgtgaatgaggaaggctggtgtttatag 6629546  T
Q  198 ggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgactttttt 271  Q
    ||||||||| |||| |||||  | ||||| || | |||| || |||||||||||||| ||||||  ||||||||    
T  6629545 ggaaagttttcaccaaactttggctaaaatcacgggttttcaggggcgaaaaagtcacgaaaagcaactttttt 6629472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 8245939 - 8246007
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagat 72  Q
    ||||||||| |||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||    
T  8245939 gttcatcttcgaaccctagcctataaatatcttgctacacatgataactaagacaaaatacaaaaagat 8246007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 22565152 - 22565062
Alignment:
Q  122 ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    ||||||||||||| || ||||||||||||||||||| |||||||||||||  ||||||  ||  |  ||||||||||||||||||||||||    
T  22565152 ctcctagaattgccttcctcttgaactgctccagttctgaacgagaaattatgaatgaggaatgcggtatttatagggaaagtttccacct 22565062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 8038634 - 8038548
Alignment:
Q  126 tagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||||| || || ||||||||||||||||||| ||||||| |||||  ||||||  |||||||||||||||| || |||||||||||    
T  8038634 tagaatcgccttcctcttgaactgctccagttctgaacgataaattatgaatgaggaagacaatatttatagagagagtttccacct 8038548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 17388848 - 17388770
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacctaactt 217  Q
    |||||||||||||| |||||| |||||||||||| ||||||  ||| || |||||| ||||||||||| ||||||||||    
T  17388848 ctcttgaactgctctagttataaacgagaaattgtgaatgaggaaggcagtatttacagggaaagttttcacctaactt 17388770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 9898678 - 9898409
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataa-ttaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    ||||||||||||||||||||||| |||||| |||||||||||| |  ||| | |||| ||| |||||||||||        ||||||||||||| |  ||    
T  9898678 gaggttcatcttagaaccctagcttataaacatctagttacacgtggtaactaaagataaagtacaaaaagat---aaaatcataccctagaaatgcaag 9898582  T
Q  100 aagaagatagaactcctcataa--ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatag 197  Q
     |||||||||||||| ||   |  ||||||||||  | || |||||| |||||||||||| ||||||| |||||  ||||||  |||    |||||||||    
T  9898581 gagaagatagaactcttcccgaggctcctagaatcaccttgctcttgtactgctccagttctgaacgaaaaattatgaatgaggaaggtgttatttatag 9898482  T
Q  198 ggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgactttttt 271  Q
    ||||||||| ||| | | || || |||||||| | | ||  | ||||||||||||||| |||| ||||||||||    
T  9898481 ggaaagttttcacttgatttgagctaaaaacatgggcttataggggcgaaaaagtcat-aaaaatgactttttt 9898409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 22783870 - 22783960
Alignment:
Q  122 ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||||||||| || |  ||||||||||||||||||| |||||||||||||  ||||||  |||    |||||| |||||||||||| ||||    
T  22783870 ctcctagaatcgcctacctcttgaactgctccagttctgaacgagaaattatgaatgaggaaggaggtatttacagggaaagtttcaacct 22783960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 31879428 - 31879312
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagaca-aaatacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    ||||||||||||||||| ||| | |||| ||||  |||||||||| |||| ||||||| |||||||||| |||        |||||||||||||| |||     
T  31879428 gaggttcatcttagaactctaacttatagatattcagttacacatgataactaagacagaaatacaaaaggat---aaaaacataccctagaaaaaatat 31879332  T
Q  100 aagaagatagaactcctcat 119  Q
     |||||||| ||||||||||    
T  31879331 gagaagataaaactcctcat 31879312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3357500 - 3357544
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacat 45  Q
    |||||||||||||||| ||||||||| ||| || |||||||||||    
T  3357500 gaggttcatcttagaaacctagcctaaaaagatttagttacacat 3357544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 3115474 - 3115208
Alignment:
Q  4 gttcatcttagaaccctagcctataaatatctagttacacattataattaa-gacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||||||||||||| ||| ||||||| ||  ||||||||||| |||||||| ||||| ||||||||||||        ||||||||| ||||||||| ||    
T  3115474 gttcatcttagaactctaacctataactacttagttacacatgataattaaagacaagatacaaaaagataaaaa---cataccctataaaagataggag 3115378  T
Q  103 aagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    ||||||||||||||| |   |||||||||| || || ||||||||||| || |||| ||||||| |||||  ||||||  ||| |  |||||||||| ||    
T  3115377 aagatagaactcctctttggctcctagaatcgccttcctcttgaactgatcgagttctgaacgataaattatgaatgaggaaggcggtatttataggaaa 3115278  T
Q  202 agtttccacctaacttcagttaaaaacaagag-tttccaagggcgaaaaagtcatgaaaagtgacttttt 270  Q
     |||||||||||||||  | |||||  | | | |||||||||||||||||||||  ||||||||||||||    
T  3115277 ggtttccacctaacttgggctaaaagtatgggttttccaagggcgaaaaagtcacaaaaagtgacttttt 3115208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 2722942 - 2722770
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagat-nnnnnnnncataccctagaaaagatag 99  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||         | |||||||||||| | ||    
T  2722942 gaggttcatcttagaaccctagcctataaatatctagttacatatgataactaagacaaaatacaaaaagataaaaacatacgtaccctagaaaata-ag 2722844  T
Q  100 aagaagatagaactcctcat--aactcctagaattgcatttctcttgaactgctccagttatgaacgagaaatt 171  Q
     ||||||||||||||||| |  | |||||||||| || || |||||||||| ||||| || |||||||||||||    
T  2722843 gagaagatagaactcctcctgaagctcctagaatcgccttcctcttgaactactccatttctgaacgagaaatt 2722770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 3430018 - 3429749
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagac-aaaatacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||| |||| | |||| ||||||| |||||||        ||| ||||| |||||| |     
T  3430018 gaggttcatcttagaaccctaacctatagatatctagttaaacatgataacttagacaaaaatactaaaagat---ataaacatcccctaaaaaagagaa 3429922  T
Q  100 aagaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagac-aatatttatag 197  Q
     |||||||||||||||| | |  |||||||||| || || ||||||||||||||||||| ||||| |||||||| ||||||  ||| |   |||||||||    
T  3429921 gagaagatagaactcctccttggctcctagaatagccttcctcttgaactgctccagttctgaacaagaaattgtgaatgaggaaggctcttatttatag 3429822  T
Q  198 ggaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttt 270  Q
    |||||||||| |||||||||    ||||| || | | || || | |||||||||||| |||||||||||||||    
T  3429821 ggaaagtttcgacctaacttggactaaaatcacgggctttcaggagcgaaaaagtcacgaaaagtgacttttt 3429749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 81 - 277
Target Start/End: Original strand, 5509454 - 5509652
Alignment:
Q  81 cataccctagaaaagatagaagaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatga 179  Q
    ||||||||||||||||||| |||||||| ||||||||||   |||||| ||| |  || ||||||||||||||||||  |||||||||||||  ||||||    
T  5509454 cataccctagaaaagataggagaagataaaactcctcattggctcctataatcggcttcctcttgaactgctccagtattgaacgagaaattatgaatga 5509553  T
Q  180 caaagacaatatttatagggaaagtttccacctaacttcagttaaaaacaagag-tttccaagggcgaaaaagtcatgaaaagtgacttttttcgcaag 277  Q
      |||||  |||||||||||||||||||||||| ||||  | || ||  | | | |||||| |||||||||||| |  |||||||||||||||||||||    
T  5509554 ggaagacggtatttatagggaaagtttccacctgacttgggctagaagtatgggttttccatgggcgaaaaagttacaaaaagtgacttttttcgcaag 5509652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 3386445 - 3386286
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga 100  Q
    ||||||||||||||||||||||||||||||||||  ||||||||  |||| ||||| ||||||||| |||||        |||||| ||||||||||||     
T  3386445 gaggttcatcttagaaccctagcctataaatatcctgttacacaagataactaagataaaatacaagaagat---ataaacataccttagaaaagatagg 3386349  T
Q  101 agaagatagaactcct-cataactcctagaattgcatttctcttgaactgctccagttatgaa 162  Q
    |||||||| ||||||| | |  | | ||||||||| || ||||||||||||||||||||||||    
T  3386348 agaagataaaactcctccttggcacttagaattgccttcctcttgaactgctccagttatgaa 3386286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 17205787 - 17206054
Alignment:
Q  2 aggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagataga- 100  Q
    |||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| |||        ||||||||| |||||||| |     
T  17205787 aggttcttcttagaatcctagcctataaatatctagttacacatgataactaagacaaaatacaaaaggat---aaacacataccctataaaagataaag 17205883  T
Q  101 agaagatagaactcctcat--aactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagg 198  Q
    |||||| | ||||| || |  | |||||||||| || || ||||||||||||||| ||   ||||||||||||  ||||||  ||| |  |||||||| |    
T  17205884 agaagacaaaactcatcctgaagctcctagaatcgccttcctcttgaactgctcctgtccagaacgagaaattatgaatgaggaaggcggtatttataag 17205983  T
Q  199 gaaagtttccacctaacttcagttaaaaacaagagtttccaagggcgaaaaagtcatgaaaagtgacttttt 270  Q
     ||||||||||||| ||||  |  ||||||  | | ||| | ||||| ||||||||| ||||||||||||||    
T  17205984 aaaagtttccacctgacttgggccaaaaacgtgggcttctaggggcg-aaaagtcataaaaagtgacttttt 17206054  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 16222903 - 16223032
Alignment:
Q  81 cataccctagaaaagatagaagaagatagaactcctcataa-ctcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatga 179  Q
    ||||||||||||||||||| ||||||||||||||||| |   ||||||||||||| || ||||||||||||||||||| | |||||||||||  ||||||    
T  16222903 cataccctagaaaagataggagaagatagaactcctccttggctcctagaattgccttcctcttgaactgctccagttcttaacgagaaattatgaatga 16223002  T
Q  180 caaagacaatatttatagggaaagtttcca 209  Q
       ||    |||||||||||||||||||||    
T  16223003 ggcaggtggtatttatagggaaagtttcca 16223032  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8267981 - 8268049
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaa 69  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  8267981 gaggttcatcttagaaccctaacctataattatctagttacacatgataactaagacaaaatacaaaaa 8268049  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 8144636 - 8144723
Alignment:
Q  125 ctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||  ||||||  ||| |  |||||||  ||| |||||||||||    
T  8144636 ctagaatcgcattcctcttgaactgctccagttctgaacgagaaattatgaatgaggaaggcggtatttatttggagagtttccacct 8144723  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 23699050 - 23698972
Alignment:
Q  134 catttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||| |||||||| |||||||||| |||||||||| ||  ||||||  |||||  |||||||||||| | |||||||||    
T  23699050 cattcctcttgaattgctccagttctgaacgagaatttatgaatgaggaagacggtatttatagggagaatttccacct 23698972  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 23717505 - 23717427
Alignment:
Q  134 catttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||| |||||||| |||||||||| |||||||||| ||  ||||||  |||||  |||||||||||| | |||||||||    
T  23717505 cattcctcttgaattgctccagttctgaacgagaatttatgaatgaggaagacggtatttatagggagaatttccacct 23717427  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 23735961 - 23735883
Alignment:
Q  134 catttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||| |||||||| |||||||||| |||||||||| ||  ||||||  |||||  |||||||||||| | |||||||||    
T  23735961 cattcctcttgaattgctccagttctgaacgagaatttatgaatgaggaagacggtatttatagggagaatttccacct 23735883  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 22471069 - 22470996
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||||||||||||| ||||  |||||||||||   ||||||  ||| || ||||||||| ||||||||||||||    
T  22471069 ctcttgaactgctcaagttccgaacgagaaataatgaatgatgaaggcagtatttatagcgaaagtttccacct 22470996  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 23755003 - 23754930
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||||||| |||||||||| | |||||||| ||   |||||  ||||||||||||||||||| | |||||||||    
T  23755003 ctcttgaattgctccagttctaaacgagaatttataaatgaggaagacaatatttatagggagaatttccacct 23754930  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8448093 - 8448133
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttac 41  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  8448093 gaggttcaacgtagaaccctagcctataaatatttagttac 8448133  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23755167 - 23755123
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacat 45  Q
    |||||||||||||||||| || |||| |||||| |||||||||||    
T  23755167 gaggttcatcttagaaccataacctaaaaatatttagttacacat 23755123  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 27073397 - 27073429
Alignment:
Q  139 ctcttgaactgctccagttatgaacgagaaatt 171  Q
    ||||||||||||||||||| |||||||||||||    
T  27073397 ctcttgaactgctccagttctgaacgagaaatt 27073429  T

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Target: scaffold0386 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 14282 - 14071
Alignment:
Q  3 ggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagatnnnnnnnncataccctagaaaagatagaag 102  Q
    |||| |||||||||||||||||||||| ||| ||||||||||| ||||  ||||||||||||||||||||         |||| ||||||||||||| ||    
T  14282 ggtttatcttagaaccctagcctataagtatttagttacacatgataaccaagacaaaatacaaaaagataaaaaa---atacgctagaaaagataggag 14186  T
Q  103 aagatagaactcctc-ataactcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaa 201  Q
    |||||||||||||||  |  |||  |||||  ||||| ||||||| |||||||||| ||| | ||| |||  ||||||  ||| |  ||||||||| |||    
T  14185 aagatagaactcctctttggctcaaagaatcacatttttcttgaattgctccagttctgagcaagagattatgaatgaggaaggcggtatttatagagaa 14086  T
Q  202 agtttccacctaactt 217  Q
    ||||| ||||||||||    
T  14085 agttt-cacctaactt 14071  T

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Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 5634 - 5573
Alignment:
Q  11 ttagaaccctagcctataaatatctagttacacattataattaagacaaaatacaaaaagat 72  Q
    ||||||| ||||||||||| | ||||||||||||| |||| ||||||||| |||||||||||    
T  5634 ttagaactctagcctataagtctctagttacacatgataactaagacaaagtacaaaaagat 5573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 394
Target Start/End: Complemental strand, 5282 - 5203
Alignment:
Q  315 gctttagtgcaatagctctagggtgcctagcgccccctgtggtgtgcctatgcgcttcagtgtgttttctatgttgtttt 394  Q
    |||||||| |||||||||| ||||||||||| ||| || ||||| ||||  || ||| |||| ||||||| |||||||||    
T  5282 gctttagttcaatagctctggggtgcctagccccctctatggtgcgcctcggcactttagtgcgttttctgtgttgtttt 5203  T

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Target: scaffold0386; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 394
Target Start/End: Complemental strand, 9562 - 9479
Alignment:
Q  311 aggcgctttagtgcaatagctctagggtgcctagcgccccctgtggtgtgcctatgcgcttcagtgtgttttctatgttgtttt 394  Q
    |||| ||||||| ||| |||||| ||||||||||||||| || ||||| || |  |||||||||||  |||||| |||||||||    
T  9562 aggctctttagttcaacagctctggggtgcctagcgccctctatggtgcgcttgggcgcttcagtgcattttctgtgttgtttt 9479  T

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Target: scaffold0062 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 42285 - 42059
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttacacattataattaagacaaaa-tacaaaaagatnnnnnnnncataccctagaaaagatag 99  Q
    |||||| ||| ||||||| || | |||| |||||||||||||||| |||| |||||||||| ||| |||||||         ||||||||||||||||||    
T  42285 gaggttaatcgtagaaccataacttatagatatctagttacacatgataactaagacaaaaatactaaaagatgaaaag---ataccctagaaaagatag 42189  T
Q  100 aagaagatagaactcctcataac--tcctagaattgcatttctcttgaactgctccagttatgaacgagaaattgcgaatgacaaagac-aatatttata 196  Q
     |||||||||| |||||| |     ||||||||| || || ||||||||||||||||| | |||||||||||||| || |||  ||| |   ||||||||    
T  42188 gagaagatagagctcctctttggcttcctagaatcgccttcctcttgaactgctccagatttgaacgagaaattgtgagtgaggaaggctggtatttata 42089  T
Q  197 gggaaagtttccacctaacttcagttaaaa 226  Q
    |  ||||||||||||||||||  |||||||    
T  42088 gaaaaagtttccacctaacttgggttaaaa 42059  T

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Target: scaffold1339 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 706 - 776
Alignment:
Q  142 ttgaactgctccagttatgaacgagaaattgcgaatgacaaagacaatatttatagggaaagtttccacct 212  Q
    |||||||||||||||| | || |||| |||  ||||||  || ||||||||||||||||||||||||||||    
T  706 ttgaactgctccagttctaaatgagatattatgaatgaggaaaacaatatttatagggaaagtttccacct 776  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27466 - 27507
Alignment:
Q  1 gaggttcatcttagaaccctagcctataaatatctagttaca 42  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  27466 gaggttcatcttagaaccctagcctaaaaatatttagttaca 27507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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